SHOGoiN Cell Methylome: GSM1370535

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370535


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M13Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 5.3576 0.0000
2 ENSMUSG00000112452 Gm48075 predicted gene, 48075 3.9069 0.0000
3 ENSMUSG00000104688 Gm18702 predicted gene, 18702 2.5850 0.0017
4 ENSMUSG00000066030 Oog2 Oosin-2 2.3219 0.0062
5 ENSMUSG00000108070 Gm43872 predicted gene, 43872 2.3219 0.0062
6 ENSMUSG00000112691 Gm8681 predicted gene 8681 2.2146 0.0000
7 ENSMUSG00000067186 Olfr132 NA 2.0984 0.0000
8 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.0850 0.0000
9 ENSMUSG00000016529 Il10 Interleukin-10 2.0000 0.0222
10 ENSMUSG00000022061 Nkx3-1 NK3 homeobox 1 2.0000 0.0005

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000101508 Gm28832 predicted gene 28832 -2.4534 0.0148
50997 ENSMUSG00000098604 Gm27295 predicted gene, 27295 -2.4534 0.0092
50996 ENSMUSG00000099785 Gm28425 predicted gene 28425 -2.4164 0.0139
50995 ENSMUSG00000068184 Ndufaf2 NADH dehydrogenase -2.3978 0.0000
50994 ENSMUSG00000063971 Krt88 NA -2.3774 0.0223
50993 ENSMUSG00000079006 Gm14151 NA -2.3760 0.0001
50992 ENSMUSG00000027677 Ttc14 tetratricopeptide repeat domain 14 -2.3546 0.0000
50991 ENSMUSG00000088212 Gm22082 predicted gene, 22082 -2.3502 0.0258
50990 ENSMUSG00000102726 Gm37937 predicted gene, 37937 -2.3219 0.5822
50989 ENSMUSG00000101967 Gm29555 predicted gene 29555 -2.3219 0.5822

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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