SHOGoiN Cell Methylome: GSM1370536

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370536


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9060100-715Sequence Read ArchiveSRP041257SRP041257_M14Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 3.8074 0.0000
2 ENSMUSG00000103384 Gm37753 predicted gene, 37753 3.1699 0.0000
3 ENSMUSG00000103707 Pcdha6 protocadherin alpha 6 3.1699 0.0000
4 ENSMUSG00000059273 Zc3h4 zinc finger CCCH-type containing 4 2.3999 0.0000
5 ENSMUSG00000109781 Gm45509 predicted gene 45509 2.3999 0.0000
6 ENSMUSG00000110181 Gm45508 predicted gene 45508 2.3999 0.0000
7 ENSMUSG00000090385 Gm7316 predicted gene 7316 2.3219 0.0068
8 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.3219 0.0068
9 ENSMUSG00000109928 Gm45539 predicted gene 45539 2.3219 0.0068
10 ENSMUSG00000029865 Sval1 seminal vesicle antigen-like 1 2.0000 0.0236

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000081897 Gm15067 predicted gene 15067 -3.1699 0.1152
51075 ENSMUSG00000068167 Csnka2ip casein kinase 2, alpha prime interacting protein -3.1699 0.1152
51074 ENSMUSG00000064536 Gm23615 predicted gene, 23615 -3.1699 0.1152
51073 ENSMUSG00000103161 Gm38148 predicted gene, 38148 -3.0875 0.0555
51072 ENSMUSG00000101668 Gm29549 predicted gene 29549 -3.0875 0.0555
51071 ENSMUSG00000101182 Gm29209 predicted gene 29209 -3.0875 0.0555
51070 ENSMUSG00000088394 Gm26312 predicted gene, 26312 -3.0875 0.0555
51069 ENSMUSG00000040541 Tmem225 transmembrane protein 225 -3.0444 0.0077
51068 ENSMUSG00000110609 Gm7948 predicted gene 7948 -3.0000 0.2034
51067 ENSMUSG00000107728 Gm38910 predicted gene, 38910 -3.0000 0.2034

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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