SHOGoiN Cell Methylome: GSM1370536

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370536


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M14Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 NA 3.8074 0.0000
2 ENSMUSG00000103384 Gm37753 predicted gene, 37753 3.1699 0.0000
3 ENSMUSG00000103707 Pcdha6 NA 3.1699 0.0000
4 ENSMUSG00000059273 Zc3h4 zinc finger CCCH-type containing 4 2.3999 0.0000
5 ENSMUSG00000109781 Gm45509 predicted gene 45509 2.3999 0.0000
6 ENSMUSG00000110181 Gm45508 predicted gene 45508 2.3999 0.0000
7 ENSMUSG00000090385 Gm7316 predicted gene 7316 2.3219 0.0068
8 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.3219 0.0068
9 ENSMUSG00000109928 Gm45539 predicted gene 45539 2.3219 0.0068
10 ENSMUSG00000029865 Sval1 seminal vesicle antigen-like 1 2.0000 0.0236

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000099699 Gm29421 predicted gene 29421 -2.3774 0.0724
50997 ENSMUSG00000067736 Gm10222 predicted gene 10222 -2.3703 0.0000
50996 ENSMUSG00000099636 Gm28422 predicted gene 28422 -2.3502 0.0261
50995 ENSMUSG00000086052 Gm11802 predicted gene 11802 -2.3502 0.0261
50994 ENSMUSG00000025086 Trub1 Probable tRNA pseudouridine synthase 1 -2.3502 0.0261
50993 ENSMUSG00000110822 Gm18305 predicted gene, 18305 -2.3219 0.5838
50992 ENSMUSG00000106080 Gm8836 predicted gene 8836 -2.3219 0.5838
50991 ENSMUSG00000103428 Gm20754 predicted gene, 20754 -2.3219 0.5838
50990 ENSMUSG00000102552 Gm21763 predicted gene, 21763 -2.3219 0.5838
50989 ENSMUSG00000101910 Gm28691 predicted gene 28691 -2.3219 0.5838

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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