SHOGoiN Cell Methylome: GSM1370537

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370537


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M15Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000040370 Etfrf1 Electron transfer flavoprotein regulatory factor 1 4.6439 0.0000
2 ENSMUSG00000053678 Defb40 NA 4.6439 0.0000
3 ENSMUSG00000109354 Olfr706 NA 3.4164 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.3219 0.0001
5 ENSMUSG00000055782 Abcd2 ATP-binding cassette, sub-family D (ALD), member 2 3.1699 0.0000
6 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.8074 0.0017
7 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0017
8 ENSMUSG00000029096 Htra3 Serine protease HTRA3 2.5850 0.0050
9 ENSMUSG00000089979 Gm15954 predicted gene 15954 2.5850 0.0001
10 ENSMUSG00000025283 Sat1 spermidine/spermine N1-acetyl transferase 1 2.3219 0.0143

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000086693 A730081D07Rik RIKEN cDNA A730081D07 gene -2.8074 0.0994
50997 ENSMUSG00000082411 Gm12016 predicted gene 12016 -2.8074 0.0994
50996 ENSMUSG00000078259 Gm11554 NA -2.8074 0.0994
50995 ENSMUSG00000075316 Scn9a Sodium channel protein type 9 subunit alpha -2.8074 0.0994
50994 ENSMUSG00000038683 Pak1ip1 p21-activated protein kinase-interacting protein 1 -2.8074 0.0994
50993 ENSMUSG00000100232 Gm28947 predicted gene 28947 -2.7925 0.0000
50992 ENSMUSG00000101111 Gm28437 predicted gene 28437 -2.7699 0.0000
50991 ENSMUSG00000102835 Gm37572 predicted gene, 37572 -2.7004 0.0431
50990 ENSMUSG00000097946 Gm8343 predicted gene 8343 -2.7004 0.0431
50989 ENSMUSG00000101533 Gm29393 predicted gene 29393 -2.6962 0.0003

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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