SHOGoiN Cell Methylome: GSM1370537

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370537


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9060100-715Sequence Read ArchiveSRP041257SRP041257_M15Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 4.6439 0.0000
2 ENSMUSG00000053678 Defb40 defensin beta 40 4.6439 0.0000
3 ENSMUSG00000109354 Olfr706 olfactory receptor 706 3.4164 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.3219 0.0001
5 ENSMUSG00000055782 Abcd2 ATP-binding cassette, sub-family D (ALD), member 2 3.1699 0.0000
6 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.8074 0.0017
7 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0017
8 ENSMUSG00000029096 Htra3 HtrA serine peptidase 3 2.5850 0.0050
9 ENSMUSG00000089979 Gm15954 predicted gene 15954 2.5850 0.0001
10 ENSMUSG00000025283 Sat1 spermidine/spermine N1-acetyl transferase 1 2.3219 0.0143

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000022184 Fbxo4 F-box protein 4 -3.7004 0.0113
51075 ENSMUSG00000076332 Gm24715 predicted gene, 24715 -3.6439 0.0005
51074 ENSMUSG00000110600 Gm45878 predicted gene 45878 -3.5850 0.0112
51073 ENSMUSG00000102195 Gm38168 predicted gene, 38168 -3.5850 0.0112
51072 ENSMUSG00000101282 Gm28152 predicted gene 28152 -3.5850 0.0112
51071 ENSMUSG00000100694 Gm29182 predicted gene 29182 -3.5850 0.0112
51070 ENSMUSG00000099341 Gm29090 predicted gene 29090 -3.5850 0.0112
51069 ENSMUSG00000093916 Gm379 predicted gene 379 -3.5850 0.0112
51068 ENSMUSG00000088212 Gm22082 predicted gene, 22082 -3.5850 0.0112
51067 ENSMUSG00000084637 n-R5s14 nuclear encoded rRNA 5S 14 -3.5850 0.0112

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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