SHOGoiN Cell Methylome: GSM1370538

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370538


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M16Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 NA 5.4919 0.0000
2 ENSMUSG00000040370 Etfrf1 Electron transfer flavoprotein regulatory factor 1 5.2479 0.0000
3 ENSMUSG00000102836 Gm37013 NA 3.8074 0.0000
4 ENSMUSG00000103125 Gm37388 NA 3.8074 0.0000
5 ENSMUSG00000103384 Gm37753 predicted gene, 37753 3.8074 0.0000
6 ENSMUSG00000103707 Pcdha6 NA 3.8074 0.0000
7 ENSMUSG00000104318 Pcdha7 Protocadherin alpha-7 3.8074 0.0000
8 ENSMUSG00000047419 Cmya5 cardiomyopathy associated 5 3.3219 0.0000
9 ENSMUSG00000064570 Gm25800 predicted gene, 25800 3.0000 0.0000
10 ENSMUSG00000083668 Gm5648 predicted pseudogene 5648 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000100884 Gm28281 predicted gene 28281 -2.4133 0.0909
50997 ENSMUSG00000110982 Gm48565 predicted gene, 48565 -2.4037 0.0121
50996 ENSMUSG00000088374 Gm22882 predicted gene, 22882 -2.4037 0.0121
50995 ENSMUSG00000099480 Gm28124 predicted gene 28124 -2.3900 0.0001
50994 ENSMUSG00000088394 Gm26312 predicted gene, 26312 -2.3900 0.0001
50993 ENSMUSG00000056820 Tsnax Translin-associated protein X -2.3426 0.0053
50992 ENSMUSG00000039242 B3galnt2 UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 -2.3308 0.0000
50991 ENSMUSG00000106679 Gm42524 predicted gene 42524 -2.3219 0.5812
50990 ENSMUSG00000106543 Gm43378 predicted gene 43378 -2.3219 0.5812
50989 ENSMUSG00000102111 Gm29566 predicted gene 29566 -2.3219 0.5812

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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