SHOGoiN Cell Methylome: GSM1370539

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370539


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M17Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 NA 5.2479 0.0000
2 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.5850 0.0000
3 ENSMUSG00000078784 1810022K09Rik Mus musculus RIKEN cDNA 1810022K09 (1810022K09Rik), transcript variant 1, mRNA. 3.4594 0.0000
4 ENSMUSG00000027801 Tm4sf4 transmembrane 4 superfamily member 4 2.8074 0.0007
5 ENSMUSG00000089849 Runx2os2 runt related transcription factor 2, opposite strand 2 2.8074 0.0007
6 ENSMUSG00000105218 Gm38413 predicted gene, 38413 2.7611 0.0000
7 ENSMUSG00000103465 Gm37617 predicted gene, 37617 2.5850 0.0022
8 ENSMUSG00000004542 Psg19 pregnancy specific glycoprotein 19 2.3219 0.0075
9 ENSMUSG00000031355 Arhgap6 Rho GTPase activating protein 6 2.3219 0.0000
10 ENSMUSG00000077473 Gm24790 predicted gene, 24790 2.3219 0.0075

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000082754 Olfr1021-ps1 olfactory receptor 1021, pseudogene 1 -2.6240 0.0018
50997 ENSMUSG00000083563 Gm13340 predicted gene 13340 -2.6060 0.0000
50996 ENSMUSG00000104825 Gm40330 predicted gene, 40330 -2.5850 0.3307
50995 ENSMUSG00000101967 Gm29555 predicted gene 29555 -2.5850 0.3307
50994 ENSMUSG00000101282 Gm28152 predicted gene 28152 -2.5850 0.2007
50993 ENSMUSG00000101134 Gm28482 predicted gene 28482 -2.5850 0.3307
50992 ENSMUSG00000101117 Gm28341 predicted gene 28341 -2.5850 0.3307
50991 ENSMUSG00000100928 Gm28487 predicted gene 28487 -2.5850 0.3307
50990 ENSMUSG00000100722 Gm29569 predicted gene 29569 -2.5850 0.3307
50989 ENSMUSG00000100537 Gm28485 predicted gene 28485 -2.5850 0.3307

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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