SHOGoiN Cell Methylome: GSM1370539

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370539


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9060100-715Sequence Read ArchiveSRP041257SRP041257_M17Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 olfactory receptor 707 5.2479 0.0000
2 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.5850 0.0000
3 ENSMUSG00000078784 1810022K09Rik RIKEN cDNA 1810022K09 gene 3.4594 0.0000
4 ENSMUSG00000027801 Tm4sf4 transmembrane 4 superfamily member 4 2.8074 0.0007
5 ENSMUSG00000089849 Runx2os2 runt related transcription factor 2, opposite strand 2 2.8074 0.0007
6 ENSMUSG00000105218 Gm38413 predicted gene, 38413 2.7611 0.0000
7 ENSMUSG00000103465 Gm37617 predicted gene, 37617 2.5850 0.0022
8 ENSMUSG00000004542 Psg19 pregnancy specific glycoprotein 19 2.3219 0.0075
9 ENSMUSG00000031355 Arhgap6 Rho GTPase activating protein 6 2.3219 0.0000
10 ENSMUSG00000077473 Gm24790 predicted gene, 24790 2.3219 0.0075

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000088212 Gm22082 predicted gene, 22082 -3.7004 0.0236
51075 ENSMUSG00000101119 Gm29060 predicted gene 29060 -3.5850 0.0056
51074 ENSMUSG00000100515 Gm17916 predicted gene, 17916 -3.5850 0.0410
51073 ENSMUSG00000100067 Gm28407 predicted gene 28407 -3.5850 0.0056
51072 ENSMUSG00000099520 Gm29061 predicted gene 29061 -3.5850 0.0056
51071 ENSMUSG00000085805 Gm14145 predicted gene 14145 -3.5850 0.0410
51070 ENSMUSG00000082248 Gm13161 predicted gene 13161 -3.5850 0.0410
51069 ENSMUSG00000070695 Cntnap5a contactin associated protein-like 5A -3.5850 0.0410
51068 ENSMUSG00000098178 Gm42418 predicted gene, 42418 -3.4806 0.0000
51067 ENSMUSG00000103936 Gm36965 predicted gene, 36965 -3.4594 0.0400

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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