SHOGoiN Cell Methylome: GSM1370540

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370540


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9060100-715Sequence Read ArchiveSRP041257SRP041257_M18Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 olfactory receptor 707 6.3038 0.0000
2 ENSMUSG00000109354 Olfr706 olfactory receptor 706 6.3038 0.0000
3 ENSMUSG00000053678 Defb40 defensin beta 40 5.3219 0.0000
4 ENSMUSG00000089589 Gm23343 predicted gene, 23343 4.1699 0.0000
5 ENSMUSG00000026285 Pdcd1 programmed cell death 1 4.0646 0.0000
6 ENSMUSG00000110158 Gm45690 predicted gene 45690 3.8074 0.0000
7 ENSMUSG00000055782 Abcd2 ATP-binding cassette, sub-family D (ALD), member 2 3.5516 0.0000
8 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 3.3219 0.0000
9 ENSMUSG00000098114 Gm26957 predicted gene, 26957 3.3219 0.0000
10 ENSMUSG00000103465 Gm37617 predicted gene, 37617 3.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000100401 Gm29248 predicted gene 29248 -3.7004 0.3830
51075 ENSMUSG00000082638 Gm12815 predicted gene 12815 -3.7004 0.3830
51074 ENSMUSG00000111227 NA -3.6439 0.3531
51073 ENSMUSG00000101170 Gm29343 predicted gene 29343 -3.5850 0.6264
51072 ENSMUSG00000099494 Gm28197 predicted gene 28197 -3.5850 0.6264
51071 ENSMUSG00000099355 Gm29342 predicted gene 29342 -3.5850 0.6264
51070 ENSMUSG00000082038 Gm12071 predicted gene 12071 -3.5850 0.6264
51069 ENSMUSG00000100248 Gm28950 predicted gene 28950 -3.5236 0.5082
51068 ENSMUSG00000102835 Gm37572 predicted gene, 37572 -3.4594 0.5045
51067 ENSMUSG00000102195 Gm38168 predicted gene, 38168 -3.4594 0.5045

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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