SHOGoiN Cell Methylome: GSM1370540

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370540


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M18Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 NA 6.3038 0.0000
2 ENSMUSG00000109354 Olfr706 NA 6.3038 0.0000
3 ENSMUSG00000053678 Defb40 NA 5.3219 0.0000
4 ENSMUSG00000089589 Gm23343 predicted gene, 23343 4.1699 0.0000
5 ENSMUSG00000026285 Pdcd1 programmed cell death 1 4.0646 0.0000
6 ENSMUSG00000110158 Gm45690 predicted gene 45690 3.8074 0.0000
7 ENSMUSG00000055782 Abcd2 ATP-binding cassette, sub-family D (ALD), member 2 3.5516 0.0000
8 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 3.3219 0.0000
9 ENSMUSG00000098114 Gm26957 predicted gene, 26957 3.3219 0.0000
10 ENSMUSG00000103465 Gm37617 predicted gene, 37617 3.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000100928 Gm28487 predicted gene 28487 -2.5850 1.0000
50997 ENSMUSG00000100287 Gm28068 predicted gene 28068 -2.5850 0.4033
50996 ENSMUSG00000099496 Gm28365 predicted gene 28365 -2.5850 1.0000
50995 ENSMUSG00000097981 Gm7583 predicted gene 7583 -2.5850 1.0000
50994 ENSMUSG00000096178 Gm20837 NA -2.5850 1.0000
50993 ENSMUSG00000095630 Igkv6-23 NA -2.5850 1.0000
50992 ENSMUSG00000094911 Gm21921 NA -2.5850 1.0000
50991 ENSMUSG00000087474 Gm12100 predicted gene 12100 -2.5850 0.3856
50990 ENSMUSG00000083990 Gm12101 predicted gene 12101 -2.5850 0.3856
50989 ENSMUSG00000083691 Gm14465 predicted gene 14465 -2.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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