SHOGoiN Cell Methylome: GSM1370541

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370541


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M19Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 5.7004 0.0000
2 ENSMUSG00000109354 Olfr706 olfactory receptor 706 4.5236 0.0000
3 ENSMUSG00000100580 4933436I20Rik RIKEN cDNA 4933436I20 gene 3.4594 0.0000
4 ENSMUSG00000111180 NA 3.1699 0.0000
5 ENSMUSG00000103384 Gm37753 predicted gene, 37753 2.5850 0.0000
6 ENSMUSG00000103707 Pcdha6 protocadherin alpha 6 2.5850 0.0000
7 ENSMUSG00000083425 Gm13992 predicted gene 13992 2.3219 0.0075
8 ENSMUSG00000097754 Ptgs2os2 prostaglandin-endoperoxide synthase 2, opposite strand 2 2.3219 0.0075
9 ENSMUSG00000097927 Gm6999 predicted gene 6999 2.3219 0.0075
10 ENSMUSG00000106712 Gm19649 predicted gene, 19649 2.3219 0.0075

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000099723 Gm28595 predicted gene 28595 -3.7004 0.0236
51075 ENSMUSG00000093916 Gm379 predicted gene 379 -3.7004 0.0236
51074 ENSMUSG00000084740 Gm25294 predicted gene, 25294 -3.7004 0.0236
51073 ENSMUSG00000077010 Gm22189 predicted gene, 22189 -3.7004 0.0236
51072 ENSMUSG00000111821 NA -3.5850 0.0410
51071 ENSMUSG00000110770 NA -3.5850 0.0410
51070 ENSMUSG00000102195 Gm38168 predicted gene, 38168 -3.5850 0.0056
51069 ENSMUSG00000101910 Gm28691 predicted gene 28691 -3.5850 0.0410
51068 ENSMUSG00000101533 Gm29393 predicted gene 29393 -3.5850 0.0056
51067 ENSMUSG00000100983 Gm29030 predicted gene 29030 -3.5850 0.0410

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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