SHOGoiN Cell Methylome: GSM1370542

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370542


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M20Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000028792 Ak2 adenylate kinase 2 6.4919 0.0000
2 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 5.0444 0.0000
3 ENSMUSG00000100580 4933436I20Rik RIKEN cDNA 4933436I20 gene 4.5236 0.0000
4 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.8074 0.0000
5 ENSMUSG00000085582 3110099E03Rik RIKEN cDNA 3110099E03 gene 2.5850 0.0001
6 ENSMUSG00000025868 Higd2a HIG1 domain family, member 2A 2.3219 0.0004
7 ENSMUSG00000025869 Nop16 NOP16 nucleolar protein 2.3219 0.0004
8 ENSMUSG00000091605 Gm8256 predicted gene 8256 2.3219 0.0000
9 ENSMUSG00000069390 Olfr707 olfactory receptor 707 2.2618 0.0000
10 ENSMUSG00000106010 Gm42616 predicted gene 42616 2.0437 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000099355 Gm29342 predicted gene 29342 -3.3219 0.6215
51075 ENSMUSG00000097614 Gm26508 predicted gene, 26508 -3.3219 0.6215
51074 ENSMUSG00000098178 Gm42418 predicted gene, 42418 -3.2999 0.0000
51073 ENSMUSG00000070552 Mrgprx1 MAS-related GPR, member X1 -3.2925 0.1654
51072 ENSMUSG00000105361 AY036118 cDNA sequence AY036118 -3.2055 0.0000
51071 ENSMUSG00000106289 Trav23 T cell receptor alpha variable 23 -3.1962 0.1604
51070 ENSMUSG00000101961 Gm28220 predicted gene 28220 -3.1699 0.6096
51069 ENSMUSG00000101785 Gm28702 predicted gene 28702 -3.1699 0.6096
51068 ENSMUSG00000100149 Gm28701 predicted gene 28701 -3.1699 0.6096
51067 ENSMUSG00000100035 Gm29473 predicted gene 29473 -3.1699 0.4981

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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