SHOGoiN Cell Methylome: GSM1370542

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370542


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M20Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000028792 Ak2 Adenylate kinase 2, mitochondrial 6.4919 0.0000
2 ENSMUSG00000040370 Etfrf1 Electron transfer flavoprotein regulatory factor 1 5.0444 0.0000
3 ENSMUSG00000100580 4933436I20Rik RIKEN cDNA 4933436I20 gene 4.5236 0.0000
4 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.8074 0.0000
5 ENSMUSG00000085582 3110099E03Rik RIKEN cDNA 3110099E03 gene 2.5850 0.0001
6 ENSMUSG00000025868 Higd2a HIG1 domain family member 2A 2.3219 0.0004
7 ENSMUSG00000025869 Nop16 Nucleolar protein 16 2.3219 0.0004
8 ENSMUSG00000091605 Gm8256 predicted gene 8256 2.3219 0.0000
9 ENSMUSG00000069390 Olfr707 NA 2.2618 0.0000
10 ENSMUSG00000106010 Gm42616 predicted gene 42616 2.0437 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000038848 Ythdf1 YTH domain family 1 -2.3675 0.0000
50997 ENSMUSG00000083563 Gm13340 predicted gene 13340 -2.3588 0.0000
50996 ENSMUSG00000083748 Gm11662 predicted gene 11662 -2.3545 0.0414
50995 ENSMUSG00000097946 Gm8343 predicted gene 8343 -2.3502 0.2378
50994 ENSMUSG00000086240 Gm7846 predicted gene 7846 -2.3502 0.2378
50993 ENSMUSG00000049460 Gm8396 predicted gene 8396 -2.3502 0.2378
50992 ENSMUSG00000082884 Gm13339 predicted gene 13339 -2.3289 0.0000
50991 ENSMUSG00000108566 Gm45031 predicted gene 45031 -2.3219 1.0000
50990 ENSMUSG00000108292 Gm44050 predicted gene, 44050 -2.3219 1.0000
50989 ENSMUSG00000107689 Gm44386 predicted gene, 44386 -2.3219 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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