SHOGoiN Cell Methylome: GSM1370544

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370544


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M22Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000053678 Defb40 NA 5.0444 0.0000
2 ENSMUSG00000072964 Bhlhb9 Protein BHLHb9 4.2479 0.0000
3 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.0444 0.0000
4 ENSMUSG00000110158 Gm45690 predicted gene 45690 3.3219 0.0000
5 ENSMUSG00000096535 Gm24755 predicted gene, 24755 3.0000 0.0000
6 ENSMUSG00000098114 Gm26957 predicted gene, 26957 2.8074 0.0001
7 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.5850 0.0003
8 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.4726 0.0000
9 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.4726 0.0000
10 ENSMUSG00000031105 Slc25a14 Mus musculus solute carrier family 25 (mitochondrial carrier, brain), member 14 (Slc25a14), transcript variant 6, mRNA. 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000060245 Vmn1r228 vomeronasal 1 receptor 228 -2.3774 0.2297
50997 ENSMUSG00000082116 Gm12188 predicted gene 12188 -2.3764 0.0845
50996 ENSMUSG00000019948 Actr6 ARP6 actin related protein 6 homolog -2.3730 0.0331
50995 ENSMUSG00000112563 Gm47608 predicted gene, 47608 -2.3502 0.0295
50994 ENSMUSG00000101961 Gm28220 predicted gene 28220 -2.3502 0.0845
50993 ENSMUSG00000107102 Gm42726 predicted gene 42726 -2.3219 0.5888
50992 ENSMUSG00000105165 Mir7686 microRNA 7686 -2.3219 0.5888
50991 ENSMUSG00000100401 Gm29248 predicted gene 29248 -2.3219 0.5888
50990 ENSMUSG00000099800 Gm28570 predicted gene 28570 -2.3219 0.5888
50989 ENSMUSG00000086577 Gm7076 predicted pseudogene 7076 -2.3219 0.3726

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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