SHOGoiN Cell Methylome: GSM1370544

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370544


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9060100-715Sequence Read ArchiveSRP041257SRP041257_M22Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000053678 Defb40 defensin beta 40 5.0444 0.0000
2 ENSMUSG00000072964 Bhlhb9 basic helix-loop-helix domain containing, class B9 4.2479 0.0000
3 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.0444 0.0000
4 ENSMUSG00000110158 Gm45690 predicted gene 45690 3.3219 0.0000
5 ENSMUSG00000096535 Gm24755 predicted gene, 24755 3.0000 0.0000
6 ENSMUSG00000098114 Gm26957 predicted gene, 26957 2.8074 0.0001
7 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.5850 0.0003
8 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.4726 0.0000
9 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.4726 0.0000
10 ENSMUSG00000031105 Slc25a14 solute carrier family 25 (mitochondrial carrier, brain), member 14 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000099643 Gm29162 predicted gene 29162 -3.4594 0.0669
51075 ENSMUSG00000102016 Gm29606 predicted gene 29606 -3.3923 0.1007
51074 ENSMUSG00000100915 Gm29321 predicted gene 29321 -3.3923 0.1007
51073 ENSMUSG00000101804 Gm28813 predicted gene 28813 -3.3219 0.2194
51072 ENSMUSG00000101106 Gm28819 predicted gene 28819 -3.3219 0.2194
51071 ENSMUSG00000100200 H2al1m H2A histone family member L1M -3.3219 0.2194
51070 ENSMUSG00000099940 Gm29265 predicted gene 29265 -3.3219 0.1000
51069 ENSMUSG00000096885 Gm21797 predicted gene, 21797 -3.3219 0.1000
51068 ENSMUSG00000095630 Igkv6-23 immunoglobulin kappa variable 6-23 -3.3219 0.2194
51067 ENSMUSG00000094911 Gm21921 predicted gene, 21921 -3.3219 0.2194

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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