SHOGoiN Cell Methylome: GSM1370544
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370544 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M22 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000053678 | Defb40 | defensin beta 40 | 5.0444 | 0.0000 |
| 2 | ENSMUSG00000072964 | Bhlhb9 | basic helix-loop-helix domain containing, class B9 | 4.2479 | 0.0000 |
| 3 | ENSMUSG00000105290 | Gm43528 | predicted gene 43528 | 4.0444 | 0.0000 |
| 4 | ENSMUSG00000110158 | Gm45690 | predicted gene 45690 | 3.3219 | 0.0000 |
| 5 | ENSMUSG00000096535 | Gm24755 | predicted gene, 24755 | 3.0000 | 0.0000 |
| 6 | ENSMUSG00000098114 | Gm26957 | predicted gene, 26957 | 2.8074 | 0.0001 |
| 7 | ENSMUSG00000082886 | Gm5386 | predicted pseudogene 5386 | 2.5850 | 0.0003 |
| 8 | ENSMUSG00000081531 | Vmn1r-ps113 | vomeronasal 1 receptor, pseudogene 113 | 2.4726 | 0.0000 |
| 9 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 2.4726 | 0.0000 |
| 10 | ENSMUSG00000031105 | Slc25a14 | solute carrier family 25 (mitochondrial carrier, brain), member 14 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 51076 | ENSMUSG00000099643 | Gm29162 | predicted gene 29162 | -3.4594 | 0.0669 |
| 51075 | ENSMUSG00000102016 | Gm29606 | predicted gene 29606 | -3.3923 | 0.1007 |
| 51074 | ENSMUSG00000100915 | Gm29321 | predicted gene 29321 | -3.3923 | 0.1007 |
| 51073 | ENSMUSG00000101804 | Gm28813 | predicted gene 28813 | -3.3219 | 0.2194 |
| 51072 | ENSMUSG00000101106 | Gm28819 | predicted gene 28819 | -3.3219 | 0.2194 |
| 51071 | ENSMUSG00000100200 | H2al1m | H2A histone family member L1M | -3.3219 | 0.2194 |
| 51070 | ENSMUSG00000099940 | Gm29265 | predicted gene 29265 | -3.3219 | 0.1000 |
| 51069 | ENSMUSG00000096885 | Gm21797 | predicted gene, 21797 | -3.3219 | 0.1000 |
| 51068 | ENSMUSG00000095630 | Igkv6-23 | immunoglobulin kappa variable 6-23 | -3.3219 | 0.2194 |
| 51067 | ENSMUSG00000094911 | Gm21921 | predicted gene, 21921 | -3.3219 | 0.2194 |
