SHOGoiN Cell Methylome: GSM1370544
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370544 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M22 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000053678 | Defb40 | NA | 5.0444 | 0.0000 |
| 2 | ENSMUSG00000072964 | Bhlhb9 | Protein BHLHb9 | 4.2479 | 0.0000 |
| 3 | ENSMUSG00000105290 | Gm43528 | predicted gene 43528 | 4.0444 | 0.0000 |
| 4 | ENSMUSG00000110158 | Gm45690 | predicted gene 45690 | 3.3219 | 0.0000 |
| 5 | ENSMUSG00000096535 | Gm24755 | predicted gene, 24755 | 3.0000 | 0.0000 |
| 6 | ENSMUSG00000098114 | Gm26957 | predicted gene, 26957 | 2.8074 | 0.0001 |
| 7 | ENSMUSG00000082886 | Gm5386 | predicted pseudogene 5386 | 2.5850 | 0.0003 |
| 8 | ENSMUSG00000081531 | Vmn1r-ps113 | vomeronasal 1 receptor, pseudogene 113 | 2.4726 | 0.0000 |
| 9 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 2.4726 | 0.0000 |
| 10 | ENSMUSG00000031105 | Slc25a14 | Mus musculus solute carrier family 25 (mitochondrial carrier, brain), member 14 (Slc25a14), transcript variant 6, mRNA. | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000060245 | Vmn1r228 | vomeronasal 1 receptor 228 | -2.3774 | 0.2297 |
| 50997 | ENSMUSG00000082116 | Gm12188 | predicted gene 12188 | -2.3764 | 0.0845 |
| 50996 | ENSMUSG00000019948 | Actr6 | ARP6 actin related protein 6 homolog | -2.3730 | 0.0331 |
| 50995 | ENSMUSG00000112563 | Gm47608 | predicted gene, 47608 | -2.3502 | 0.0295 |
| 50994 | ENSMUSG00000101961 | Gm28220 | predicted gene 28220 | -2.3502 | 0.0845 |
| 50993 | ENSMUSG00000107102 | Gm42726 | predicted gene 42726 | -2.3219 | 0.5888 |
| 50992 | ENSMUSG00000105165 | Mir7686 | microRNA 7686 | -2.3219 | 0.5888 |
| 50991 | ENSMUSG00000100401 | Gm29248 | predicted gene 29248 | -2.3219 | 0.5888 |
| 50990 | ENSMUSG00000099800 | Gm28570 | predicted gene 28570 | -2.3219 | 0.5888 |
| 50989 | ENSMUSG00000086577 | Gm7076 | predicted pseudogene 7076 | -2.3219 | 0.3726 |
