SHOGoiN Cell Methylome: GSM1370545

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370545


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9060100-715Sequence Read ArchiveSRP041257SRP041257_M23Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105218 Gm38413 predicted gene, 38413 3.1699 0.0000
2 ENSMUSG00000031355 Arhgap6 Rho GTPase activating protein 6 3.0000 0.0000
3 ENSMUSG00000069390 Olfr707 olfactory receptor 707 2.8074 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.8074 0.0000
5 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.8074 0.0000
6 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0000
7 ENSMUSG00000025758 Plk4 polo-like kinase 4 2.5850 0.0003
8 ENSMUSG00000065068 n-R5s5 nuclear encoded rRNA 5S 5 2.5850 0.0003
9 ENSMUSG00000107681 4930528H21Rik RIKEN cDNA 4930528H21 gene 2.5850 0.0003
10 ENSMUSG00000091881 Gm17146 predicted gene 17146 2.5646 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000101245 Gm28965 predicted gene 28965 -4.6439 0.0005
51075 ENSMUSG00000100578 Gm28709 predicted gene 28709 -4.6439 0.0005
51074 ENSMUSG00000095632 Vmn1r175 vomeronasal 1 receptor 175 -4.5850 0.0007
51073 ENSMUSG00000025086 Trub1 TruB pseudouridine (psi) synthase family member 1 -4.5850 0.0007
51072 ENSMUSG00000109789 Gm2033 predicted gene 2033 -4.5648 0.0001
51071 ENSMUSG00000101440 Gm29425 predicted gene 29425 -4.5546 0.0012
51070 ENSMUSG00000109439 Gm44853 predicted gene 44853 -4.5236 0.0138
51069 ENSMUSG00000100988 Gm28136 predicted gene 28136 -4.5236 0.0138
51068 ENSMUSG00000100167 Gm28207 predicted gene 28207 -4.4811 0.0001
51067 ENSMUSG00000094354 Gm21882 predicted gene, 21882 -4.4374 0.0002

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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