SHOGoiN Cell Methylome: GSM1370545

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370545


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M23Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105218 Gm38413 predicted gene, 38413 3.1699 0.0000
2 ENSMUSG00000031355 Arhgap6 Rho GTPase activating protein 6 3.0000 0.0000
3 ENSMUSG00000069390 Olfr707 NA 2.8074 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.8074 0.0000
5 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.8074 0.0000
6 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0000
7 ENSMUSG00000025758 Plk4 Serine/threonine-protein kinase PLK4 2.5850 0.0003
8 ENSMUSG00000065068 n-R5s5 nuclear encoded rRNA 5S 5 2.5850 0.0003
9 ENSMUSG00000107681 4930528H21Rik RIKEN cDNA 4930528H21 gene 2.5850 0.0003
10 ENSMUSG00000091881 Gm17146 predicted gene 17146 2.5646 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000094939 Gm21773 NA -3.4594 0.2256
50997 ENSMUSG00000087444 Gm5475 NA -3.4594 0.2256
50996 ENSMUSG00000081325 Gm12599 predicted gene 12599 -3.4594 0.1026
50995 ENSMUSG00000022026 Olfm4 Mus musculus olfactomedin 4 (Olfm4), mRNA. -3.4594 0.2256
50994 ENSMUSG00000098178 Gm42418 predicted gene, 42418 -3.4586 0.0000
50993 ENSMUSG00000107647 Gm44445 predicted gene, 44445 -3.4579 0.0351
50992 ENSMUSG00000110609 Gm7948 predicted gene 7948 -3.3923 0.1586
50991 ENSMUSG00000096885 Gm21797 NA -3.3923 0.0348
50990 ENSMUSG00000093975 Vmn2r-ps19 vomeronasal 2, receptor, pseudogene 19 -3.3923 0.1586
50989 ENSMUSG00000082248 Gm13161 predicted gene 13161 -3.3923 0.1586

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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