SHOGoiN Cell Methylome: GSM1370546

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370546


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9060100-715Sequence Read ArchiveSRP041257SRP041257_M24Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 2.8122 0.0000
2 ENSMUSG00000109539 Gm44667 predicted gene 44667 2.8074 0.0008
3 ENSMUSG00000040132 Svs2 seminal vesicle secretory protein 2 2.3219 0.0089
4 ENSMUSG00000075137 Olfr1163 olfactory receptor 1163 2.3219 0.0089
5 ENSMUSG00000077971 Gm26259 predicted gene, 26259 2.3219 0.0089
6 ENSMUSG00000083094 Gm4908 predicted gene 4908 2.3219 0.0089
7 ENSMUSG00000083166 Gm8648 predicted gene 8648 2.3219 0.0089
8 ENSMUSG00000084479 Gm26424 predicted gene, 26424 2.3219 0.0089
9 ENSMUSG00000085757 1700019B21Rik RIKEN cDNA 1700019B21 gene 2.3219 0.0001
10 ENSMUSG00000087815 Gm22491 predicted gene, 22491 2.3219 0.0089

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000101170 Gm29343 predicted gene 29343 -4.1699 0.0028
51075 ENSMUSG00000099355 Gm29342 predicted gene 29342 -4.1699 0.0028
51074 ENSMUSG00000090303 Vmn2r-ps3 vomeronasal 2, receptor, pseudogene 3 -4.1699 0.0028
51073 ENSMUSG00000101119 Gm29060 predicted gene 29060 -4.0875 0.0001
51072 ENSMUSG00000100915 Gm29321 predicted gene 29321 -4.0875 0.0048
51071 ENSMUSG00000100227 Gm28291 predicted gene 28291 -4.0875 0.0048
51070 ENSMUSG00000099520 Gm29061 predicted gene 29061 -4.0875 0.0001
51069 ENSMUSG00000102016 Gm29606 predicted gene 29606 -4.0444 0.0002
51068 ENSMUSG00000101115 Gm28664 predicted gene 28664 -4.0000 0.0002
51067 ENSMUSG00000100849 Gm28663 predicted gene 28663 -4.0000 0.0002

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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