SHOGoiN Cell Methylome: GSM1370556

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370556


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9060100-715Sequence Read ArchiveSRP041257SRP041257_M26Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 5.0444 0.0000
2 ENSMUSG00000100580 4933436I20Rik RIKEN cDNA 4933436I20 gene 3.9069 0.0000
3 ENSMUSG00000026285 Pdcd1 programmed cell death 1 3.7657 0.0000
4 ENSMUSG00000109539 Gm44667 predicted gene 44667 3.3219 0.0014
5 ENSMUSG00000022962 Gart phosphoribosylglycinamide formyltransferase 2.7459 0.0000
6 ENSMUSG00000078784 1810022K09Rik RIKEN cDNA 1810022K09 gene 2.5850 0.0258
7 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.5850 0.0258
8 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.5850 0.0258
9 ENSMUSG00000101242 Gm28319 predicted gene 28319 2.5850 0.0258
10 ENSMUSG00000102569 Gm37041 predicted gene, 37041 2.5850 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000100054 Gm28202 predicted gene 28202 -3.4594 0.0021
51075 ENSMUSG00000099554 Gm28259 predicted gene 28259 -3.4594 0.0021
51074 ENSMUSG00000090500 Gm17057 predicted gene 17057 -3.4594 0.0021
51073 ENSMUSG00000086630 Gm14397 predicted gene 14397 -3.4594 0.0021
51072 ENSMUSG00000061602 Vmn1r78 vomeronasal 1 receptor 78 -3.4594 0.0021
51071 ENSMUSG00000021094 Dhrs7 dehydrogenase/reductase (SDR family) member 7 -3.4594 0.0000
51070 ENSMUSG00000101531 Gm29672 predicted gene 29672 -3.3923 0.0000
51069 ENSMUSG00000099555 Gm28081 predicted gene 28081 -3.3923 0.0000
51068 ENSMUSG00000104674 Gm42756 predicted gene 42756 -3.3219 0.0041
51067 ENSMUSG00000088620 Gm23032 predicted gene, 23032 -3.3219 0.0041

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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