SHOGoiN Cell Methylome: GSM1370556

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370556


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M26Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 5.0444 0.0000
2 ENSMUSG00000100580 4933436I20Rik RIKEN cDNA 4933436I20 gene 3.9069 0.0000
3 ENSMUSG00000026285 Pdcd1 programmed cell death 1 3.7657 0.0000
4 ENSMUSG00000109539 Gm44667 predicted gene 44667 3.3219 0.0014
5 ENSMUSG00000022962 Gart Mus musculus phosphoribosylglycinamide formyltransferase (Gart), transcript variant 2, mRNA. 2.7459 0.0000
6 ENSMUSG00000078784 1810022K09Rik Mus musculus RIKEN cDNA 1810022K09 (1810022K09Rik), transcript variant 1, mRNA. 2.5850 0.0258
7 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.5850 0.0258
8 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.5850 0.0258
9 ENSMUSG00000101242 Gm28319 predicted gene 28319 2.5850 0.0258
10 ENSMUSG00000102569 Gm37041 predicted gene, 37041 2.5850 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000060112 Olfr60 NA -2.3219 0.1261
50997 ENSMUSG00000099843 Gm7160 predicted gene 7160 -2.2808 0.0000
50996 ENSMUSG00000099785 Gm28425 predicted gene 28425 -2.2691 0.0000
50995 ENSMUSG00000082884 Gm13339 predicted gene 13339 -2.1951 0.0000
50994 ENSMUSG00000079006 Gm14151 NA -2.1887 0.0000
50993 ENSMUSG00000037965 Zc3h7a zinc finger CCCH type containing 7 A -2.1777 0.0000
50992 ENSMUSG00000099421 Gm29067 predicted gene 29067 -2.1699 0.0403
50991 ENSMUSG00000086371 Gm12478 predicted gene 12478 -2.1699 0.0403
50990 ENSMUSG00000020462 Cfap36 Cilia- and flagella-associated protein 36 -2.1686 0.0000
50989 ENSMUSG00000104572 Fbxw23 F-box and WD-40 domain protein 23 -2.1610 0.0021

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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