SHOGoiN Cell Methylome: GSM1370558

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370558


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M28Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 3.4594 0.0002
2 ENSMUSG00000020620 Abca8b ATP-binding cassette, sub-family A (ABC1), member 8b 2.6455 0.0000
3 ENSMUSG00000069390 Olfr707 NA 2.6240 0.0000
4 ENSMUSG00000109354 Olfr706 NA 2.6240 0.0000
5 ENSMUSG00000017688 Hnf4g hepatocyte nuclear factor 4 gamma 2.5850 0.0002
6 ENSMUSG00000082971 Gm13517 predicted gene 13517 2.5850 0.0152
7 ENSMUSG00000098114 Gm26957 predicted gene, 26957 2.5850 0.0152
8 ENSMUSG00000107957 Gm44088 predicted gene, 44088 2.5000 0.0002
9 ENSMUSG00000027209 Fam227b Protein FAM227B 2.3219 0.0000
10 ENSMUSG00000029281 Smr2 Submaxillary gland androgen-regulated protein 2, isoform alpha 2.3219 0.0352

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000067288 Rps28 ribosomal protein S28 -2.1690 0.0000
50997 ENSMUSG00000090031 4732440D04Rik RIKEN cDNA 4732440D04 gene -2.1446 0.0000
50996 ENSMUSG00000106110 Gm43571 predicted gene 43571 -2.1222 0.0000
50995 ENSMUSG00000100446 Gm28242 predicted gene 28242 -2.1155 0.0311
50994 ENSMUSG00000031189 Aff2 AF4/FMR2 family member 2 -2.1005 0.0000
50993 ENSMUSG00000052759 Gpr25 Probable G-protein coupled receptor 25 -2.0929 0.0000
50992 ENSMUSG00000045744 Bricd5 BRICHOS domain containing 5 -2.0803 0.0000
50991 ENSMUSG00000086171 Pcsk2os1 proprotein convertase subtilisin/kexin type 2, opposite strand 1 -2.0630 0.0000
50990 ENSMUSG00000041881 Ndufa7 NADH dehydrogenase -2.0600 0.0000
50989 ENSMUSG00000014496 Ankrd28 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A -2.0358 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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