SHOGoiN Cell Methylome: GSM1370559

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370559


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M29Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000053678 Defb40 NA 4.9069 0.0000
2 ENSMUSG00000101242 Gm28319 predicted gene 28319 3.3219 0.0006
3 ENSMUSG00000049882 Vcpkmt valosin containing protein lysine (K) methyltransferase 3.0000 0.0030
4 ENSMUSG00000065919 Gm24449 predicted gene, 24449 3.0000 0.0030
5 ENSMUSG00000050813 Olfr332 NA 2.8074 0.0069
6 ENSMUSG00000077892 Gm22901 predicted gene, 22901 2.8074 0.0069
7 ENSMUSG00000104318 Pcdha7 Protocadherin alpha-7 2.8074 0.0069
8 ENSMUSG00000067971 Olfr1321 NA 2.6455 0.0000
9 ENSMUSG00000084248 Gm11409 predicted gene 11409 2.4534 0.0006
10 ENSMUSG00000021975 Ints9 integrator complex subunit 9 isoform 2 2.3219 0.0013

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000099785 Gm28425 predicted gene 28425 -2.3023 0.0000
50997 ENSMUSG00000035367 Rmi1 RecQ-mediated genome instability protein 1 -2.2972 0.0000
50996 ENSMUSG00000021546 Hnrnpk Heteroous nuclear ribonucleoprotein K -2.2972 0.0000
50995 ENSMUSG00000109070 Olfr511-ps1 olfactory receptor 511, pseudogene 1 -2.2618 0.0001
50994 ENSMUSG00000038840 Birc7 Baculoviral IAP repeat-containing protein 7 Baculoviral IAP repeat-containing protein 7 30 kDa subunit -2.2616 0.0000
50993 ENSMUSG00000083922 Gm3835 predicted pseudogene 3835 -2.1962 0.0114
50992 ENSMUSG00000104476 Gm38211 predicted gene, 38211 -2.1763 0.0209
50991 ENSMUSG00000075188 Olfr1056 NA -2.1699 0.0874
50990 ENSMUSG00000081803 Gm15282 predicted gene 15282 -2.1693 0.0003
50989 ENSMUSG00000111830 4930568E12Rik RIKEN cDNA 4930568E12 gene -2.1610 0.0002

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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