SHOGoiN Cell Methylome: GSM1370559

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370559


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M29Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000053678 Defb40 defensin beta 40 4.9069 0.0000
2 ENSMUSG00000101242 Gm28319 predicted gene 28319 3.3219 0.0006
3 ENSMUSG00000049882 Vcpkmt valosin containing protein lysine (K) methyltransferase 3.0000 0.0030
4 ENSMUSG00000065919 Gm24449 predicted gene, 24449 3.0000 0.0030
5 ENSMUSG00000050813 Olfr332 olfactory receptor 332 2.8074 0.0069
6 ENSMUSG00000077892 Gm22901 predicted gene, 22901 2.8074 0.0069
7 ENSMUSG00000104318 Pcdha7 protocadherin alpha 7 2.8074 0.0069
8 ENSMUSG00000067971 Olfr1321 olfactory receptor 1321 2.6455 0.0000
9 ENSMUSG00000084248 Gm11409 predicted gene 11409 2.4534 0.0006
10 ENSMUSG00000021975 Ints9 integrator complex subunit 9 2.3219 0.0013

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000073878 Gm13304 predicted gene 13304 -3.3923 0.0002
51075 ENSMUSG00000057855 Krtap6-3 keratin associated protein 6-3 -3.3774 0.0000
51074 ENSMUSG00000111285 NA -3.3219 0.0003
51073 ENSMUSG00000101516 Gm29074 predicted gene 29074 -3.3219 0.0063
51072 ENSMUSG00000101204 Gm29271 predicted gene 29271 -3.3219 0.0063
51071 ENSMUSG00000097971 Gm26917 predicted gene, 26917 -3.2889 0.0000
51070 ENSMUSG00000031481 Tpte transmembrane phosphatase with tensin homology -3.2773 0.0000
51069 ENSMUSG00000100232 Gm28947 predicted gene 28947 -3.2479 0.0003
51068 ENSMUSG00000100035 Gm29473 predicted gene 29473 -3.2224 0.0000
51067 ENSMUSG00000100862 Gm10925 predicted gene 10925 -3.2054 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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