SHOGoiN Cell Methylome: GSM1370560

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370560


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M30Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 NA 5.1293 0.0000
2 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.8074 0.0000
3 ENSMUSG00000107135 Gm43806 predicted gene 43806 2.8074 0.0000
4 ENSMUSG00000104083 Gm29739 predicted gene, 29739 2.5850 0.0001
5 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.5850 0.0001
6 ENSMUSG00000072574 Gm17184 predicted gene 17184 2.3219 0.0007
7 ENSMUSG00000084441 Gm26255 predicted gene, 26255 2.3219 0.0007
8 ENSMUSG00000085122 4933404K08Rik RIKEN cDNA 4933404K08 gene 2.3219 0.0000
9 ENSMUSG00000091466 Gm17183 predicted gene 17183 2.3219 0.0007
10 ENSMUSG00000106469 C030015E24Rik RIKEN cDNA C030015E24 gene 2.3219 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000061136 Prpf40a Pre-mRNA-processing factor 40 homolog A -2.2113 0.0000
50997 ENSMUSG00000030325 Klrb1c NA -2.2106 0.0385
50996 ENSMUSG00000098037 Gm7765 predicted gene 7765 -2.2095 0.0000
50995 ENSMUSG00000026960 Arl6ip6 ADP-ribosylation factor-like protein 6-interacting protein 6 -2.2038 0.0000
50994 ENSMUSG00000089982 Gm7568 predicted gene 7568 -2.1699 1.0000
50993 ENSMUSG00000036298 Slc2a13 solute carrier family 2 (facilitated glucose transporter), member 13 -2.1685 0.0000
50992 ENSMUSG00000111210 Gm18378 predicted gene, 18378 -2.1610 0.3837
50991 ENSMUSG00000095632 Vmn1r175 vomeronasal 1 receptor 175 -2.1610 0.2351
50990 ENSMUSG00000083748 Gm11662 predicted gene 11662 -2.1610 0.2351
50989 ENSMUSG00000073730 4933415F23Rik RIKEN cDNA 4933415F23 gene -2.1610 0.6079

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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