SHOGoiN Cell Methylome: GSM1370561

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370561


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M31Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 4.0000 0.0001
2 ENSMUSG00000112452 Gm48075 predicted gene, 48075 3.8074 0.0004
3 ENSMUSG00000105290 Gm43528 predicted gene 43528 3.5698 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.1699 0.0095
5 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.1699 0.0095
6 ENSMUSG00000089994 Gm16239 predicted gene 16239 2.9037 0.0004
7 ENSMUSG00000030887 Pdzd9 PDZ domain containing 9 2.8074 0.0347
8 ENSMUSG00000047344 Lancl3 LanC-like protein 3 2.8074 0.0347
9 ENSMUSG00000052005 Gm9864 predicted gene 9864 2.8074 0.0000
10 ENSMUSG00000087677 Gm15226 predicted gene 15226 2.8074 0.0347

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000094911 Gm21921 NA -2.8074 0.0091
50997 ENSMUSG00000085053 Gm14809 predicted gene 14809 -2.8074 0.0091
50996 ENSMUSG00000082038 Gm12071 predicted gene 12071 -2.8074 0.0091
50995 ENSMUSG00000042745 Id1 inhibitor of DNA binding 1 -2.8074 0.0091
50994 ENSMUSG00000099785 Gm28425 predicted gene 28425 -2.7297 0.0000
50993 ENSMUSG00000076258 Gm23935 predicted gene, 23935 -2.6666 0.0000
50992 ENSMUSG00000094510 Gm24565 predicted gene, 24565 -2.6610 0.0000
50991 ENSMUSG00000083990 Gm12101 predicted gene 12101 -2.6610 0.0000
50990 ENSMUSG00000074620 Gm10731 predicted gene 10731 -2.6439 0.0000
50989 ENSMUSG00000112155 4930477N07Rik RIKEN cDNA 4930477N07 gene -2.5850 0.0200

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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