SHOGoiN Cell Methylome: GSM1370561

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370561


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9060100-715Sequence Read ArchiveSRP041257SRP041257_M31Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 4.0000 0.0001
2 ENSMUSG00000112452 NA 3.8074 0.0004
3 ENSMUSG00000105290 Gm43528 predicted gene 43528 3.5698 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.1699 0.0095
5 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.1699 0.0095
6 ENSMUSG00000089994 Gm16239 predicted gene 16239 2.9037 0.0004
7 ENSMUSG00000030887 Pdzd9 PDZ domain containing 9 2.8074 0.0347
8 ENSMUSG00000047344 Lancl3 LanC lantibiotic synthetase component C-like 3 (bacterial) 2.8074 0.0347
9 ENSMUSG00000052005 Gm9864 predicted gene 9864 2.8074 0.0000
10 ENSMUSG00000087677 Gm15226 predicted gene 15226 2.8074 0.0347

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000111285 NA -3.9542 0.0000
51075 ENSMUSG00000101782 Gm28964 predicted gene 28964 -3.9542 0.0000
51074 ENSMUSG00000101960 Gm29311 predicted gene 29311 -3.9069 0.0000
51073 ENSMUSG00000095845 Gm5741 predicted gene 5741 -3.9069 0.0000
51072 ENSMUSG00000082638 Gm12815 predicted gene 12815 -3.9069 0.0000
51071 ENSMUSG00000080886 Gm14847 predicted gene 14847 -3.9069 0.0000
51070 ENSMUSG00000060038 Dhps deoxyhypusine synthase -3.9069 0.0000
51069 ENSMUSG00000008167 Fbxw9 F-box and WD-40 domain protein 9 -3.9069 0.0000
51068 ENSMUSG00000077264 Gm24429 predicted gene, 24429 -3.8774 0.0000
51067 ENSMUSG00000085265 Nell1os NEL-like 1, opposite strand -3.8413 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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