SHOGoiN Cell Methylome: GSM1370562

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370562


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M32Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 NA 4.9069 0.0000
2 ENSMUSG00000040370 Etfrf1 Electron transfer flavoprotein regulatory factor 1 4.3923 0.0000
3 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.5850 0.0011
4 ENSMUSG00000102267 9530003O04Rik RIKEN cDNA 9530003O04 gene 3.3219 0.0042
5 ENSMUSG00000110940 Olfr274-ps1 olfactory receptor 274, pseudogene 1 3.0000 0.0162
6 ENSMUSG00000105290 Gm43528 predicted gene 43528 2.6962 0.0000
7 ENSMUSG00000043384 Gprasp1 G protein-coupled receptor associated sorting protein 1 2.6427 0.0001
8 ENSMUSG00000072964 Bhlhb9 Protein BHLHb9 2.6427 0.0001
9 ENSMUSG00000036036 Zfp57 zinc finger protein 57 2.5850 0.0636
10 ENSMUSG00000104509 Gm33994 predicted gene, 33994 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000082638 Gm12815 predicted gene 12815 -2.0000 0.0322
50997 ENSMUSG00000081803 Gm15282 predicted gene 15282 -2.0000 0.1096
50996 ENSMUSG00000077511 Gm25875 predicted gene, 25875 -2.0000 0.1096
50995 ENSMUSG00000073929 Trim30e-ps1 tripartite motif-containing 30E, pseudogene 1 -2.0000 0.0120
50994 ENSMUSG00000028251 Tstd3 thiosulfate sulfurtransferase (rhodanese)-like domain containing 3 -2.0000 0.1096
50993 ENSMUSG00000099099 Gm27337 predicted gene, 27337 -1.9918 0.0000
50992 ENSMUSG00000034723 Tmx4 thioredoxin-related transmembrane protein 4 -1.9887 0.0000
50991 ENSMUSG00000011752 Pgam1 Phosphoglycerate mutase 1 -1.9337 0.0000
50990 ENSMUSG00000091896 Ube2d2a ubiquitin-conjugating enzyme E2D 2A -1.9174 0.0000
50989 ENSMUSG00000062961 Ccdc177 Coiled-coil domain-containing protein 177 -1.9073 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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