SHOGoiN Cell Methylome: GSM1370563

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370563


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9060100-715Sequence Read ArchiveSRP041257SRP041257_M33Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.8074 0.0046
2 ENSMUSG00000040254 Sema3d sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 2.7233 0.0000
3 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.5850 0.0112
4 ENSMUSG00000083425 Gm13992 predicted gene 13992 2.5850 0.0112
5 ENSMUSG00000088596 Gm24602 predicted gene, 24602 2.5850 0.0001
6 ENSMUSG00000032766 Gng11 guanine nucleotide binding protein (G protein), gamma 11 2.3219 0.0275
7 ENSMUSG00000094356 Igkv8-28 immunoglobulin kappa variable 8-28 2.3219 0.0275
8 ENSMUSG00000102167 Gm2345 predicted gene 2345 2.3219 0.0000
9 ENSMUSG00000103465 Gm37617 predicted gene, 37617 2.3219 0.0275
10 ENSMUSG00000106742 Gm42474 predicted gene 42474 2.3219 0.0275

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000100140 Gm28789 predicted gene 28789 -3.1699 0.0248
51075 ENSMUSG00000089546 Gm25839 predicted gene, 25839 -3.1699 0.0248
51074 ENSMUSG00000096885 Gm21797 predicted gene, 21797 -3.0875 0.0023
51073 ENSMUSG00000089705 Gm15970 predicted gene 15970 -3.0543 0.0000
51072 ENSMUSG00000106846 Gm42786 predicted gene 42786 -3.0000 0.0465
51071 ENSMUSG00000101962 Gm28741 predicted gene 28741 -3.0000 0.0465
51070 ENSMUSG00000100243 Gm28367 predicted gene 28367 -3.0000 0.0039
51069 ENSMUSG00000082411 Gm12016 predicted gene 12016 -3.0000 0.0465
51068 ENSMUSG00000104476 Gm38211 predicted gene, 38211 -2.9240 0.0001
51067 ENSMUSG00000100915 Gm29321 predicted gene 29321 -2.9069 0.0068

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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