SHOGoiN Cell Methylome: GSM1370564

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370564


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M34Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.3923 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.8074 0.0000
3 ENSMUSG00000112081 Gm9004 predicted gene 9004 3.3219 0.0009
4 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0095
5 ENSMUSG00000062524 Ncr1 natural cytotoxicity triggering receptor 1 2.5850 0.0207
6 ENSMUSG00000067276 Capn6 Calpain-6 2.5850 0.0207
7 ENSMUSG00000105967 Gm47298 predicted gene, 47298 2.5850 0.0207
8 ENSMUSG00000098666 Mir6950 microRNA 6950 2.4534 0.0009
9 ENSMUSG00000025525 Apool MICOS complex subunit Mic27 2.3219 0.0450
10 ENSMUSG00000062901 Klhl24 Kelch-like protein 24 2.3219 0.0450

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000109372 Gm19410 NA -2.2146 0.0000
50997 ENSMUSG00000092123 Gm17581 NA -2.2012 0.0000
50996 ENSMUSG00000080907 4930455H04Rik RIKEN cDNA 4930455H04 gene -2.1962 0.0092
50995 ENSMUSG00000033377 Palmd palmdelphin -2.1962 0.0092
50994 ENSMUSG00000095448 Olfr859 NA -2.1568 0.0000
50993 ENSMUSG00000090533 Gm8214 predicted gene 8214 -2.1308 0.0000
50992 ENSMUSG00000083066 Gm12748 predicted gene 12748 -2.1112 0.0000
50991 ENSMUSG00000089224 Gm22075 predicted gene, 22075 -2.1039 0.0000
50990 ENSMUSG00000082754 Olfr1021-ps1 olfactory receptor 1021, pseudogene 1 -2.0850 0.0000
50989 ENSMUSG00000022237 Ankrd33b Ankyrin repeat domain-containing protein 33B -2.0514 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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