SHOGoiN Cell Methylome: GSM1370564

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370564


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9060100-715Sequence Read ArchiveSRP041257SRP041257_M34Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.3923 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.8074 0.0000
3 ENSMUSG00000112081 NA 3.3219 0.0009
4 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0095
5 ENSMUSG00000062524 Ncr1 natural cytotoxicity triggering receptor 1 2.5850 0.0207
6 ENSMUSG00000067276 Capn6 calpain 6 2.5850 0.0207
7 ENSMUSG00000105967 NA 2.5850 0.0207
8 ENSMUSG00000098666 Mir6950 microRNA 6950 2.4534 0.0009
9 ENSMUSG00000025525 Apool apolipoprotein O-like 2.3219 0.0450
10 ENSMUSG00000062901 Klhl24 kelch-like 24 2.3219 0.0450

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000106106 NA -3.5404 0.0000
51075 ENSMUSG00000105361 AY036118 cDNA sequence AY036118 -3.5367 0.0000
51074 ENSMUSG00000110506 Gm8637 predicted gene 8637 -3.5361 0.0000
51073 ENSMUSG00000101245 Gm28965 predicted gene 28965 -3.5236 0.0000
51072 ENSMUSG00000100578 Gm28709 predicted gene 28709 -3.5236 0.0000
51071 ENSMUSG00000100232 Gm28947 predicted gene 28947 -3.5236 0.0000
51070 ENSMUSG00000100003 Gm29646 predicted gene 29646 -3.5236 0.0000
51069 ENSMUSG00000097971 Gm26917 predicted gene, 26917 -3.4670 0.0000
51068 ENSMUSG00000111227 NA -3.4594 0.0025
51067 ENSMUSG00000101804 Gm28813 predicted gene 28813 -3.4594 0.0025

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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