SHOGoiN Cell Methylome: GSM1370565

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370565


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M35Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.8580 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.8074 0.0002
3 ENSMUSG00000098114 Gm26957 predicted gene, 26957 3.5850 0.0010
4 ENSMUSG00000015405 Ace2 angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 3.0000 0.0156
5 ENSMUSG00000103125 Gm37388 NA 3.0000 0.0156
6 ENSMUSG00000104318 Pcdha7 Protocadherin alpha-7 3.0000 0.0156
7 ENSMUSG00000040254 Sema3d Semaphorin-3D 2.8074 0.0005
8 ENSMUSG00000040370 Etfrf1 Electron transfer flavoprotein regulatory factor 1 2.7618 0.0000
9 ENSMUSG00000078932 CN725425 cDNA sequence CN725425 2.6610 0.0001
10 ENSMUSG00000109354 Olfr706 NA 2.6591 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000050603 Olfr1008 NA -2.3219 0.0623
50997 ENSMUSG00000031380 Vegfd vascular endothelial growth factor D -2.3219 0.0623
50996 ENSMUSG00000101111 Gm28437 predicted gene 28437 -2.2781 0.0000
50995 ENSMUSG00000101249 Gm29216 predicted gene 29216 -2.2736 0.0000
50994 ENSMUSG00000102070 Gm28661 predicted gene 28661 -2.2534 0.0000
50993 ENSMUSG00000068167 Csnka2ip Casein kinase II subunit alpha'-interacting protein -2.2297 0.0005
50992 ENSMUSG00000016200 Syt14 Synaptotagmin-14 -2.2187 0.0000
50991 ENSMUSG00000100862 Gm10925 predicted gene 10925 -2.1908 0.0000
50990 ENSMUSG00000096630 Vmn2r26 vomeronasal 2, receptor 26 -2.1699 0.0214
50989 ENSMUSG00000100544 Gm28606 predicted gene 28606 -2.1610 0.0010

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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