SHOGoiN Cell Methylome: GSM1370567

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370567


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9060100-715Sequence Read ArchiveSRP041257SRP041257_M37Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.8074 0.0000
2 ENSMUSG00000103384 Gm37753 predicted gene, 37753 3.5850 0.0000
3 ENSMUSG00000103707 Pcdha6 protocadherin alpha 6 3.5850 0.0000
4 ENSMUSG00000100315 1700031P21Rik RIKEN cDNA 1700031P21 gene 3.0000 0.0000
5 ENSMUSG00000053678 Defb40 defensin beta 40 2.8774 0.0000
6 ENSMUSG00000064570 Gm25800 predicted gene, 25800 2.8074 0.0044
7 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.8074 0.0044
8 ENSMUSG00000103625 Gm37357 predicted gene, 37357 2.8074 0.0044
9 ENSMUSG00000109539 Gm44667 predicted gene 44667 2.6240 0.0000
10 ENSMUSG00000065253 Gm23970 predicted gene, 23970 2.5850 0.0109

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000102016 Gm29606 predicted gene 29606 -3.1699 0.0249
51075 ENSMUSG00000101949 Gm5370 predicted gene 5370 -3.1699 0.0249
51074 ENSMUSG00000101931 Gm28108 predicted gene 28108 -3.1699 0.0249
51073 ENSMUSG00000101804 Gm28813 predicted gene 28813 -3.1699 0.0249
51072 ENSMUSG00000101440 Gm29425 predicted gene 29425 -3.1699 0.0249
51071 ENSMUSG00000101204 Gm29271 predicted gene 29271 -3.1699 0.0249
51070 ENSMUSG00000100544 Gm28606 predicted gene 28606 -3.1699 0.0249
51069 ENSMUSG00000093916 Gm379 predicted gene 379 -3.1699 0.0249
51068 ENSMUSG00000086240 Gm7846 predicted gene 7846 -3.1699 0.0249
51067 ENSMUSG00000082411 Gm12016 predicted gene 12016 -3.1699 0.0249

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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