SHOGoiN Cell Methylome: GSM1370567

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370567


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M37Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.8074 0.0000
2 ENSMUSG00000103384 Gm37753 predicted gene, 37753 3.5850 0.0000
3 ENSMUSG00000103707 Pcdha6 NA 3.5850 0.0000
4 ENSMUSG00000100315 1700031P21Rik RIKEN cDNA 1700031P21 gene 3.0000 0.0000
5 ENSMUSG00000053678 Defb40 NA 2.8774 0.0000
6 ENSMUSG00000064570 Gm25800 predicted gene, 25800 2.8074 0.0044
7 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.8074 0.0044
8 ENSMUSG00000103625 Gm37357 predicted gene, 37357 2.8074 0.0044
9 ENSMUSG00000109539 Gm44667 predicted gene 44667 2.6240 0.0000
10 ENSMUSG00000065253 Gm23970 predicted gene, 23970 2.5850 0.0109

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000064941 Gm23238 predicted gene, 23238 -2.3219 0.1521
50997 ENSMUSG00000044994 Olfr1426 NA -2.3219 0.1521
50996 ENSMUSG00000104326 Trbv28 T cell receptor beta variable 28 -2.2925 0.0023
50995 ENSMUSG00000101961 Gm28220 predicted gene 28220 -2.2297 0.0041
50994 ENSMUSG00000083563 Gm13340 predicted gene 13340 -2.2259 0.0000
50993 ENSMUSG00000100884 Gm28281 predicted gene 28281 -2.2098 0.0008
50992 ENSMUSG00000108740 Gm6008 predicted gene 6008 -2.1610 0.0074
50991 ENSMUSG00000098303 Gm27459 predicted gene, 27459 -2.1610 0.0074
50990 ENSMUSG00000037474 Dtl Denticleless protein homolog -2.1504 0.0000
50989 ENSMUSG00000022545 Ercc4 DNA repair endonuclease XPF -2.1346 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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