SHOGoiN Cell Methylome: GSM1370568

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370568


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M38Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 5.2479 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.0000 0.0048
3 ENSMUSG00000111982 NA 2.5850 0.0005
4 ENSMUSG00000084441 Gm26255 predicted gene, 26255 2.3219 0.0473
5 ENSMUSG00000095331 Ptma-ps1 prothymosin alpha, pseudogene 1 2.3219 0.0473
6 ENSMUSG00000104152 Ighv10-4 immunoglobulin heavy variable V10-4 2.3219 0.0473
7 ENSMUSG00000110999 NA 2.3219 0.0022
8 ENSMUSG00000105290 Gm43528 predicted gene 43528 2.1699 0.0153
9 ENSMUSG00000069390 Olfr707 olfactory receptor 707 2.0620 0.0000
10 ENSMUSG00000091028 Gm10722 predicted gene 10722 2.0026 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000099494 Gm28197 predicted gene 28197 -2.0000 0.2534
51075 ENSMUSG00000099355 Gm29342 predicted gene 29342 -2.0000 0.2534
51074 ENSMUSG00000096507 Gm21772 predicted gene, 21772 -2.0000 0.2534
51073 ENSMUSG00000094354 Gm21882 predicted gene, 21882 -2.0000 0.2534
51072 ENSMUSG00000093490 Gm19932 predicted gene, 19932 -2.0000 0.2534
51071 ENSMUSG00000090224 Gm15974 predicted gene 15974 -2.0000 0.2534
51070 ENSMUSG00000084147 Gm15075 predicted gene 15075 -2.0000 0.2534
51069 ENSMUSG00000083248 Gm6574 predicted gene 6574 -2.0000 0.0334
51068 ENSMUSG00000082327 Gm13801 predicted gene 13801 -2.0000 0.2534
51067 ENSMUSG00000073929 Trim30e-ps1 tripartite motif-containing 30E, pseudogene 1 -2.0000 0.0334

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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