SHOGoiN Cell Methylome: GSM1370568

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370568


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M38Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 NA 5.2479 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.0000 0.0048
3 ENSMUSG00000111982 Gm35135 predicted gene, 35135 2.5850 0.0005
4 ENSMUSG00000084441 Gm26255 predicted gene, 26255 2.3219 0.0473
5 ENSMUSG00000095331 Ptma-ps1 prothymosin alpha, pseudogene 1 2.3219 0.0473
6 ENSMUSG00000104152 Ighv10-4 immunoglobulin heavy variable V10-4 2.3219 0.0473
7 ENSMUSG00000110999 Olfr1075-ps1 olfactory receptor 1075, pseudogene 1 2.3219 0.0022
8 ENSMUSG00000105290 Gm43528 predicted gene 43528 2.1699 0.0153
9 ENSMUSG00000069390 Olfr707 NA 2.0620 0.0000
10 ENSMUSG00000091028 Gm10722 NA 2.0026 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000081654 Gm5383 predicted gene 5383 -1.5850 0.5023
50997 ENSMUSG00000080649 Gm26156 predicted gene, 26156 -1.5850 0.5023
50996 ENSMUSG00000080298 Gm14807 predicted gene 14807 -1.5850 0.5023
50995 ENSMUSG00000077010 Gm22189 predicted gene, 22189 -1.5850 0.5023
50994 ENSMUSG00000076966 Mir466b-2 microRNA 466b-2 -1.5850 0.5023
50993 ENSMUSG00000070594 Gm4788 complement factor H-related protein C isoform 2 -1.5850 0.5023
50992 ENSMUSG00000056380 Gpr50 Melatonin-related receptor -1.5850 0.5023
50991 ENSMUSG00000031333 Abcb7 ATP-binding cassette, sub-family B (MDR/TAP), member 7 -1.5850 0.5023
50990 ENSMUSG00000029335 Bmp3 Bone morphotic protein 3 -1.5850 0.5023
50989 ENSMUSG00000039952 Dag1 Dystroglycan Alpha-dystroglycan Beta-dystroglycan -1.5836 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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