SHOGoiN Cell Methylome: GSM1370570

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370570


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M40Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000102569 Gm37041 predicted gene, 37041 4.7549 0.0000
2 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.4594 0.0000
3 ENSMUSG00000095737 Igkv11-125 NA 3.1699 0.0006
4 ENSMUSG00000102134 Gm9931 NA 3.1699 0.0006
5 ENSMUSG00000031712 Il15 Interleukin-15 3.0000 0.0016
6 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.9290 0.0000
7 ENSMUSG00000069014 Gm5641 predicted gene 5641 2.8074 0.0039
8 ENSMUSG00000088362 Gm23498 predicted gene, 23498 2.8074 0.0039
9 ENSMUSG00000084441 Gm26255 predicted gene, 26255 2.6240 0.0000
10 ENSMUSG00000081731 Calr-ps calreticulin, pseudogene 2.5850 0.0099

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000110609 Gm7948 predicted gene 7948 -1.5850 0.5211
50997 ENSMUSG00000109220 Gm30196 predicted gene, 30196 -1.5850 0.5211
50996 ENSMUSG00000108427 Gm36696 predicted gene, 36696 -1.5850 0.5211
50995 ENSMUSG00000106858 Gm43844 predicted gene 43844 -1.5850 0.1569
50994 ENSMUSG00000106259 Trav11n T cell receptor alpha variable 11N -1.5850 0.5211
50993 ENSMUSG00000106027 Mir669a-7 microRNA 669a-7 -1.5850 0.1569
50992 ENSMUSG00000105734 4930558C23Rik RIKEN cDNA 4930558C23 gene -1.5850 0.5211
50991 ENSMUSG00000105680 Gm18340 predicted gene, 18340 -1.5850 0.5211
50990 ENSMUSG00000105330 Mir669a-6 microRNA 669a-6 -1.5850 0.1569
50989 ENSMUSG00000104652 Mir669a-8 microRNA 669a-8 -1.5850 0.1569

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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