SHOGoiN Cell Methylome: GSM1370570

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370570


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M40Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000102569 Gm37041 predicted gene, 37041 4.7549 0.0000
2 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.4594 0.0000
3 ENSMUSG00000095737 Igkv11-125 immunoglobulin kappa variable 11-125 3.1699 0.0006
4 ENSMUSG00000102134 Gm9931 predicted gene 9931 3.1699 0.0006
5 ENSMUSG00000031712 Il15 interleukin 15 3.0000 0.0016
6 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.9290 0.0000
7 ENSMUSG00000069014 Gm5641 predicted gene 5641 2.8074 0.0039
8 ENSMUSG00000088362 Gm23498 predicted gene, 23498 2.8074 0.0039
9 ENSMUSG00000084441 Gm26255 predicted gene, 26255 2.6240 0.0000
10 ENSMUSG00000081731 Calr-ps calreticulin, pseudogene 2.5850 0.0099

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000096353 Gm24957 predicted gene, 24957 -2.3219 0.1569
51075 ENSMUSG00000089836 Gm16290 predicted gene 16290 -2.3219 0.1569
51074 ENSMUSG00000096449 Gm4076 predicted gene 4076 -2.3137 0.0000
51073 ENSMUSG00000076258 Gm23935 predicted gene, 23935 -2.2166 0.0000
51072 ENSMUSG00000037965 Zc3h7a zinc finger CCCH type containing 7 A -2.0113 0.0000
51071 ENSMUSG00000111209 NA -2.0000 0.2817
51070 ENSMUSG00000109100 Olfr1464-ps1 olfactory receptor 1464, pseudogene 1 -2.0000 0.2817
51069 ENSMUSG00000103432 6720464F23Rik RIKEN cDNA 6720464F23 gene -2.0000 0.2817
51068 ENSMUSG00000103391 Gm38302 predicted gene, 38302 -2.0000 0.2817
51067 ENSMUSG00000102195 Gm38168 predicted gene, 38168 -2.0000 0.2817

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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