SHOGoiN Cell Methylome: GSM1370571

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370571


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M41Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 NA 5.5749 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 4.7004 0.0000
3 ENSMUSG00000101818 Gm28269 NA 4.3219 0.0000
4 ENSMUSG00000107194 Gm43173 predicted gene 43173 4.1699 0.0000
5 ENSMUSG00000107374 Gm43172 predicted gene 43172 4.1699 0.0000
6 ENSMUSG00000084441 Gm26255 predicted gene, 26255 4.0000 0.0001
7 ENSMUSG00000020226 Slc5a4b solute carrier family 5 (neutral amino acid transporters, system A), member 4b 3.5850 0.0011
8 ENSMUSG00000086540 Scml1 Scm polycomb group protein like 1 3.4594 0.0022
9 ENSMUSG00000061809 Tbpl2 TATA box-binding protein-like protein 2 3.3219 0.0043
10 ENSMUSG00000090449 Gm17076 predicted gene 17076 3.3219 0.0043

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000024878 Cbwd1 COBW domain-containing protein 1 -1.9585 0.0000
50997 ENSMUSG00000028669 Pithd1 PITH domain-containing protein 1 -1.9495 0.0000
50996 ENSMUSG00000097370 4930467K11Rik RIKEN cDNA 4930467K11 gene -1.9222 0.0000
50995 ENSMUSG00000088349 Gm22335 predicted gene, 22335 -1.9117 0.0000
50994 ENSMUSG00000101456 Gm29043 predicted gene 29043 -1.9037 0.0054
50993 ENSMUSG00000100243 Gm28367 predicted gene 28367 -1.9037 0.0054
50992 ENSMUSG00000021713 Ppwd1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 -1.9000 0.0000
50991 ENSMUSG00000024991 Eif3a Eukaryotic translation initiation factor 3 subunit A -1.8923 0.0000
50990 ENSMUSG00000100131 Gm28439 predicted gene 28439 -1.8624 0.0000
50989 ENSMUSG00000063320 1190007I07Rik RIKEN cDNA 1190007I07 gene -1.8530 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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