SHOGoiN Cell Methylome: GSM1370572

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370572


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M42Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 NA 5.9887 0.0000
2 ENSMUSG00000109539 Gm44667 predicted gene 44667 5.7549 0.0000
3 ENSMUSG00000047419 Cmya5 cardiomyopathy associated 5 4.5850 0.0000
4 ENSMUSG00000102569 Gm37041 predicted gene, 37041 4.0875 0.0000
5 ENSMUSG00000109354 Olfr706 NA 3.7868 0.0000
6 ENSMUSG00000075137 Olfr1163 NA 3.5850 0.0003
7 ENSMUSG00000089678 Agxt2 Alanine--glyoxylate aminotransferase 2, mitochondrial 3.5850 0.0003
8 ENSMUSG00000103465 Gm37617 predicted gene, 37617 3.3219 0.0014
9 ENSMUSG00000110158 Gm45690 predicted gene 45690 3.3219 0.0014
10 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 3.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000021669 Col4a3bp Collagen type IV alpha-3-binding protein -1.8597 0.0000
50997 ENSMUSG00000089146 Gm25266 predicted gene, 25266 -1.8581 0.0000
50996 ENSMUSG00000086986 Gm12103 predicted gene 12103 -1.8074 0.1264
50995 ENSMUSG00000100887 Gm29297 predicted gene 29297 -1.7925 0.0036
50994 ENSMUSG00000064686 Gm25810 predicted gene, 25810 -1.7925 0.0632
50993 ENSMUSG00000031737 Irx5 Iroquois-class homeodomain protein IRX-5 -1.7892 0.0000
50992 ENSMUSG00000053347 Zfp943 zinc finger prtoein 943 -1.7854 0.0000
50991 ENSMUSG00000022892 App amyloid beta (A4) precursor protein -1.7677 0.0000
50990 ENSMUSG00000075188 Olfr1056 NA -1.7655 0.0127
50989 ENSMUSG00000109192 Olfr468-ps1 olfactory receptor 468, pseudogene 1 -1.7618 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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