SHOGoiN Cell Methylome: GSM1370573

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370573


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M43Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 6.5546 0.0000
2 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 5.2095 0.0000
3 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 5.2095 0.0000
4 ENSMUSG00000101818 Gm28269 NA 4.5850 0.0000
5 ENSMUSG00000102569 Gm37041 predicted gene, 37041 4.4085 0.0000
6 ENSMUSG00000099582 Gm29014 predicted gene 29014 3.7004 0.0000
7 ENSMUSG00000076481 Trbv30 T cell receptor beta variable 29-1 3.3219 0.0005
8 ENSMUSG00000101242 Gm28319 predicted gene 28319 3.2696 0.0000
9 ENSMUSG00000105290 Gm43528 predicted gene 43528 3.0646 0.0000
10 ENSMUSG00000043865 Tas2r118 Taste receptor type 2 member 16 3.0000 0.0025

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000098129 Gm27040 predicted gene, 27040 -1.8713 0.0000
50997 ENSMUSG00000077264 Gm24429 predicted gene, 24429 -1.8617 0.0067
50996 ENSMUSG00000073144 4930599N23Rik RIKEN cDNA 4930599N23 gene -1.8589 0.0000
50995 ENSMUSG00000028788 Ptp4a2 Protein tyrosine phosphatase type IVA 2 -1.8512 0.0000
50994 ENSMUSG00000080681 Gm23990 predicted gene, 23990 -1.8389 0.0000
50993 ENSMUSG00000021010 Npas3 neuronal PAS domain protein 3 -1.8381 0.0000
50992 ENSMUSG00000111234 4930591E09Rik RIKEN cDNA 4930591E09 gene -1.8214 0.0002
50991 ENSMUSG00000048661 Lemd3 LEM domain containing 3 -1.8152 0.0000
50990 ENSMUSG00000099125 Gm27322 predicted gene, 27322 -1.8084 0.0000
50989 ENSMUSG00000100003 Gm29646 predicted gene 29646 -1.8074 0.2508

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...