SHOGoiN Cell Methylome: GSM1370574

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370574


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9060100-715Sequence Read ArchiveSRP041257SRP041257_M44Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 4.6439 0.0000
2 ENSMUSG00000084441 Gm26255 predicted gene, 26255 3.8074 0.0000
3 ENSMUSG00000054641 Mmrn1 multimerin 1 3.1699 0.0020
4 ENSMUSG00000078784 1810022K09Rik RIKEN cDNA 1810022K09 gene 3.1699 0.0000
5 ENSMUSG00000089309 Gm24838 predicted gene, 24838 3.0222 0.0000
6 ENSMUSG00000059106 Olfr961 olfactory receptor 961 2.8074 0.0096
7 ENSMUSG00000103667 Ighv1-8 immunoglobulin heavy variable V1-8 2.8074 0.0096
8 ENSMUSG00000104152 Ighv10-4 immunoglobulin heavy variable V10-4 2.8074 0.0096
9 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 2.7740 0.0000
10 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.6610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000099341 Gm29090 predicted gene 29090 -2.5850 0.0664
51075 ENSMUSG00000085265 Nell1os NEL-like 1, opposite strand -2.5850 0.0664
51074 ENSMUSG00000083859 Gm12003 predicted gene 12003 -2.5850 0.0664
51073 ENSMUSG00000083563 Gm13340 predicted gene 13340 -2.5338 0.0000
51072 ENSMUSG00000110203 Gm45365 predicted gene 45365 -2.5000 0.0025
51071 ENSMUSG00000061602 Vmn1r78 vomeronasal 1 receptor 78 -2.5000 0.0025
51070 ENSMUSG00000076480 Trbv29 T cell receptor beta, variable 29 -2.4534 0.0001
51069 ENSMUSG00000100887 Gm29297 predicted gene 29297 -2.3502 0.0004
51068 ENSMUSG00000110409 Gm9908 predicted gene 9908 -2.3219 0.1296
51067 ENSMUSG00000103829 Gm38174 predicted gene, 38174 -2.3219 0.0253

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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