SHOGoiN Cell Methylome: GSM1370574

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370574


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M44Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 4.6439 0.0000
2 ENSMUSG00000084441 Gm26255 predicted gene, 26255 3.8074 0.0000
3 ENSMUSG00000054641 Mmrn1 multimerin 1 3.1699 0.0020
4 ENSMUSG00000078784 1810022K09Rik Mus musculus RIKEN cDNA 1810022K09 (1810022K09Rik), transcript variant 1, mRNA. 3.1699 0.0000
5 ENSMUSG00000089309 Gm24838 predicted gene, 24838 3.0222 0.0000
6 ENSMUSG00000059106 Olfr961 NA 2.8074 0.0096
7 ENSMUSG00000103667 Ighv1-8 immunoglobulin heavy variable V1-8 2.8074 0.0096
8 ENSMUSG00000104152 Ighv10-4 immunoglobulin heavy variable V10-4 2.8074 0.0096
9 ENSMUSG00000040370 Etfrf1 Electron transfer flavoprotein regulatory factor 1 2.7740 0.0000
10 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.6610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000022263 Trio Triple functional domain protein -1.7598 0.0000
50997 ENSMUSG00000098880 Gm27238 predicted gene 27238 -1.7586 0.0000
50996 ENSMUSG00000098720 Gm27239 predicted gene 27239 -1.7586 0.0000
50995 ENSMUSG00000073486 Gm10518 NA -1.7441 0.0000
50994 ENSMUSG00000025781 Atp5c1 ATP synthase subunit gamma, mitochondrial -1.7346 0.0000
50993 ENSMUSG00000105957 Gm43254 predicted gene 43254 -1.7267 0.0004
50992 ENSMUSG00000069727 Zfp975 zinc finger protein 975 -1.7267 0.0000
50991 ENSMUSG00000099170 5730403I07Rik RIKEN cDNA 5730403I07 gene -1.7233 0.0025
50990 ENSMUSG00000028982 Slc25a33 Solute carrier family 25 member 33 -1.7194 0.0000
50989 ENSMUSG00000042087 4933440N22Rik RIKEN cDNA 4933440N22 gene -1.7174 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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