SHOGoiN Cell Methylome: GSM1413828

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1413828


Profile download
6020500-761Sequence Read ArchiveSRP041257SRP041257_M46Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliumBisulfite-Seq (WGBS, deeper sequencing)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000073448 Gm10509 predicted gene 10509 3.1699 0.0000
2 ENSMUSG00000107683 Gm44139 predicted gene, 44139 3.1699 0.0000
3 ENSMUSG00000108250 Tas2r111-ps2 taste receptor, type 2, member 111, pseudogene 2 3.1699 0.0000
4 ENSMUSG00000092199 Gm18358 predicted gene, 18358 2.8906 0.0000
5 ENSMUSG00000079271 1700049E17Rik1 RIKEN cDNA 1700049E17 gene, gene 1 2.8219 0.0000
6 ENSMUSG00000076958 Gm24935 predicted gene, 24935 2.8074 0.0000
7 ENSMUSG00000079521 Gm5938 predicted gene 5938 2.8074 0.0000
8 ENSMUSG00000097966 Gm9423 predicted gene 9423 2.8074 0.0000
9 ENSMUSG00000108164 Gm43899 predicted gene, 43899 2.8074 0.0000
10 ENSMUSG00000108544 Cyp2b26-ps cytochrome P450, family 2, subfamily b, polypeptide 26, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000089322 Gm25977 predicted gene, 25977 -2.5850 0.2256
51075 ENSMUSG00000084295 Olfr1235-ps1 olfactory receptor 1235, pseudogene 1 -2.5850 0.2256
51074 ENSMUSG00000083960 Gm4918 predicted gene 4918 -2.5850 0.5909
51073 ENSMUSG00000083351 Gm15783 predicted gene 15783 -2.5850 0.0140
51072 ENSMUSG00000075903 Gm23941 predicted gene, 23941 -2.5850 0.5909
51071 ENSMUSG00000103502 9330121J05Rik RIKEN cDNA 9330121J05 gene -2.5839 0.0000
51070 ENSMUSG00000028369 Svep1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 -2.5817 0.0000
51069 ENSMUSG00000048077 H1fnt H1 histone family, member N, testis-specific -2.5803 0.0000
51068 ENSMUSG00000088716 Gm22724 predicted gene, 22724 -2.5707 0.0000
51067 ENSMUSG00000106337 Gm42478 predicted gene 42478 -2.5615 0.0096

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...