SHOGoiN Cell Methylome: GSM1849307

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849307


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M3Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000142892 PIGK phosphatidylinositol glycan anchor biosynthesis class K 4.3923 0.0000
2 ENSG00000241891 RPL9P6 ribosomal protein L9 pseudogene 6 4.3219 0.0000
3 ENSG00000252290 NA 4.3219 0.0000
4 ENSG00000283698 NA 4.3219 0.0000
5 ENSG00000081248 CACNA1S calcium voltage-gated channel subunit alpha1 S 4.2479 0.0000
6 ENSG00000232337 NA 4.2479 0.0000
7 ENSG00000234566 RPL7AP71 ribosomal protein L7a pseudogene 71 4.2479 0.0000
8 ENSG00000237870 NA 4.1699 0.0000
9 ENSG00000250869 NA 4.1699 0.0000
10 ENSG00000231398 NA 4.1424 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63647 ENSG00000248716 NA -3.3219 1.0000
63646 ENSG00000248419 NA -3.3219 1.0000
63645 ENSG00000247363 NA -3.3219 0.1153
63644 ENSG00000244255 NA -3.3219 1.0000
63643 ENSG00000242262 NA -3.3219 0.3934
63642 ENSG00000241582 RPL23AP8 ribosomal protein L23a pseudogene 8 -3.3219 1.0000
63641 ENSG00000239745 RN7SL790P RNA, 7SL, cytoplasmic 790, pseudogene -3.3219 1.0000
63640 ENSG00000238913 RNU7-196P RNA, U7 small nuclear 196 pseudogene -3.3219 1.0000
63639 ENSG00000238232 NA -3.3219 1.0000
63638 ENSG00000238038 ATP6V0E1P3 ATPase H+ transporting V0 subunit e1 pseudogene 3 -3.3219 0.1153

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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