SHOGoiN Cell Methylome: GSM1849307

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849307


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6020800-755Sequence Read ArchiveSRP062328SRP062328_M3Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliumBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000142892 PIGK phosphatidylinositol glycan anchor biosynthesis class K 4.3923 0.0000
2 ENSG00000241891 RPL9P6 ribosomal protein L9 pseudogene 6 4.3219 0.0000
3 ENSG00000252290 Small nucleolar RNA SNORA25 4.3219 0.0000
4 ENSG00000283698 NA 4.3219 0.0000
5 ENSG00000081248 CACNA1S calcium voltage-gated channel subunit alpha1 S 4.2479 0.0000
6 ENSG00000232337 NA 4.2479 0.0000
7 ENSG00000234566 RPL7AP71 ribosomal protein L7a pseudogene 71 4.2479 0.0000
8 ENSG00000237870 NA 4.1699 0.0000
9 ENSG00000250869 NA 4.1699 0.0000
10 ENSG00000231398 NA 4.1424 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000261731 NA -3.7004 0.6162
63818 ENSG00000259747 NA -3.7004 0.6162
63817 ENSG00000259462 CPEB1-AS1 CPEB1 antisense RNA 1 -3.7004 0.6162
63816 ENSG00000253250 C8orf88 chromosome 8 open reading frame 88 -3.7004 0.6162
63815 ENSG00000251185 NA -3.7004 0.2566
63814 ENSG00000248281 NA -3.7004 0.6162
63813 ENSG00000244575 IGKV1-27 immunoglobulin kappa variable 1-27 -3.7004 0.1153
63812 ENSG00000237760 NA -3.7004 0.2566
63811 ENSG00000236365 NA -3.7004 0.6162
63810 ENSG00000231023 LINC00326 long intergenic non-protein coding RNA 326 -3.7004 0.6162

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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