SHOGoiN Cell Methylome: GSM1849308

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849308


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M4Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000278594 NA 4.6439 0.0000
2 ENSG00000283636 NA 4.6439 0.0000
3 ENSG00000201713 RNA5SP125 RNA, 5S ribosomal pseudogene 125 4.4594 0.0000
4 ENSG00000229696 KARSP1 lysyl-tRNA synthetase pseudogene 1 4.4594 0.0000
5 ENSG00000278159 MIR8062 microRNA 8062 4.4594 0.0000
6 ENSG00000228209 NA 4.3923 0.0000
7 ENSG00000267871 ZNF460-AS1 ZNF460 antisense RNA 1 4.3923 0.0000
8 ENSG00000260932 NA 4.3294 0.0000
9 ENSG00000240494 RPS12P28 ribosomal protein S12 pseudogene 28 4.3219 0.0000
10 ENSG00000248635 NA 4.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63647 ENSG00000199405 SNORA1B small nucleolar RNA, H/ACA box 1B -3.4670 0.1087
63646 ENSG00000251340 MTCYBP35 mitochondrially encoded cytochrome b pseudogene 35 -3.4634 0.0000
63645 ENSG00000284300 NA -3.4607 0.0000
63644 ENSG00000284084 AOX3P-AOX2P AOX3P-AOX2P readthrough, transcribed pseudogene -3.4594 1.0000
63643 ENSG00000283193 MIR1243 microRNA 1243 -3.4594 1.0000
63642 ENSG00000276807 NA -3.4594 1.0000
63641 ENSG00000274814 NA -3.4594 0.2511
63640 ENSG00000267606 NA -3.4594 1.0000
63639 ENSG00000267443 NA -3.4594 0.0058
63638 ENSG00000266162 YWHAEP2 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 2 -3.4594 0.2511

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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