SHOGoiN Cell Methylome: GSM1849309

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849309


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M5Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000264812 NA 4.7549 0.0000
2 ENSG00000216307 NA 4.5236 0.0000
3 ENSG00000237716 NA 4.5236 0.0000
4 ENSG00000225956 NA 4.4594 0.0000
5 ENSG00000251523 NA 4.4594 0.0000
6 ENSG00000199855 RNU6-490P RNA, U6 small nuclear 490, pseudogene 4.3923 0.0000
7 ENSG00000230079 STK24P1 serine/threonine kinase 24 pseudogene 1 4.3923 0.0000
8 ENSG00000239742 RN7SL672P RNA, 7SL, cytoplasmic 672, pseudogene 4.3219 0.0000
9 ENSG00000246777 NA 4.3219 0.0000
10 ENSG00000214195 HMGN2P31 high mobility group nucleosomal binding domain 2 pseudogene 31 4.2479 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000253548 PYDC2 pyrin domain containing 2 -3.6427 0.2546
63818 ENSG00000187773 FAM69C family with sequence similarity 69 member C -3.6204 0.0000
63817 ENSG00000113318 MSH3 mutS homolog 3 -3.6148 0.0000
63816 ENSG00000225630 MTND2P28 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 28 -3.6129 0.0000
63815 ENSG00000161653 NAGS N-acetylglutamate synthase -3.6079 0.0000
63814 ENSG00000131096 PYY peptide YY -3.6079 0.0000
63813 ENSG00000101558 VAPA VAMP associated protein A -3.6075 0.0000
63812 ENSG00000269028 MTRNR2L12 MT-RNR2-like 12 -3.5962 0.0000
63811 ENSG00000283275 MIR4275 microRNA 4275 -3.5956 0.0002
63810 ENSG00000240875 LINC00886 long intergenic non-protein coding RNA 886 -3.5943 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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