SHOGoiN Cell Methylome: GSM1849311

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849311


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6020800-755Sequence Read ArchiveSRP062328SRP062328_M7Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliumBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000260171 NA 7.8765 0.0000
2 ENSG00000280665 NA 7.8329 0.0000
3 ENSG00000188691 OR56A5 olfactory receptor family 56 subfamily A member 5 7.7698 0.0000
4 ENSG00000252091 RNU6-1146P RNA, U6 small nuclear 1146, pseudogene 7.4998 0.0000
5 ENSG00000232707 AP1B1P2 adaptor related protein complex 1 beta 1 subunit pseudogene 2 7.4429 0.0000
6 ENSG00000237439 NA 7.4429 0.0000
7 ENSG00000214344 OR4F13P olfactory receptor family 4 subfamily F member 13 pseudogene 7.3399 0.0000
8 ENSG00000215493 NA 7.2668 0.0000
9 ENSG00000250330 NA 7.2288 0.0000
10 ENSG00000202324 RNA5SP366 RNA, 5S ribosomal pseudogene 366 7.1997 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000125498 KIR2DL1 killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 1 -6.4745 0.0000
63818 ENSG00000264084 MIR5688 microRNA 5688 -6.4594 0.0003
63817 ENSG00000234515 PPP1R2P1 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 1 -6.4594 0.0000
63816 ENSG00000152049 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 -6.4505 0.0000
63815 ENSG00000256039 LINC02446 long intergenic non-protein coding RNA 2446 -6.4478 0.0000
63814 ENSG00000261120 NA -6.4429 0.0005
63813 ENSG00000249210 GAPDHP38 glyceraldehyde 3 phosphate dehydrogenase pseudogene 38 -6.4429 0.0005
63812 ENSG00000282122 Immunoglobulin heavy variable 7-4-1 -6.4263 0.0005
63811 ENSG00000185966 LCE3E late cornified envelope 3E -6.4263 0.0005
63810 ENSG00000200815 RNU6-1091P RNA, U6 small nuclear 1091, pseudogene -6.4181 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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