SHOGoiN Cell Methylome: GSM1849312

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849312


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M8Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200677 NA 8.2479 0.0000
2 ENSG00000279259 NA 7.7177 0.0000
4 ENSG00000279310 NA 7.6073 0.0000
5 ENSG00000213235 EEF1A1P16 eukaryotic translation elongation factor 1 alpha 1 pseudogene 16 7.5999 0.0000
6 ENSG00000256211 NA 7.5999 0.0000
7 ENSG00000213928 IRF9 interferon regulatory factor 9 7.4094 0.0000
8 ENSG00000230394 NA 7.3923 0.0000
9 ENSG00000260914 NA 7.2946 0.0000
10 ENSG00000181788 SIAH2 siah E3 ubiquitin protein ligase 2 7.2854 0.0000
63638 ENSG00000207124 RNU6-163P RNA, U6 small nuclear 163, pseudogene -5.9665 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63647 ENSG00000273552 NA -5.9773 0.0000
63646 ENSG00000260100 NA -5.9773 0.0091
63645 ENSG00000250363 KRT18P21 keratin 18 pseudogene 21 -5.9773 0.0091
63644 ENSG00000232606 LINC01412 long intergenic non-protein coding RNA 1412 -5.9773 0.0091
63643 ENSG00000230338 MTND4P19 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 19 -5.9773 0.0091
63642 ENSG00000104112 SCG3 secretogranin III -5.9773 0.0091
63641 ENSG00000253855 NA -5.9773 0.0000
63640 ENSG00000267744 NA -5.9738 0.0001
63639 ENSG00000266981 NA -5.9738 0.0001
63638 ENSG00000207124 RNU6-163P RNA, U6 small nuclear 163, pseudogene -5.9665 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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