SHOGoiN Cell Methylome: GSM1849314

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849314


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M10Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000274883 Metazoan signal recognition particle RNA 5.9307 0.0000
2 ENSG00000228650 NA 5.6724 0.0000
3 ENSG00000279917 NA 5.6724 0.0000
4 ENSG00000235357 LINC01621 long intergenic non-protein coding RNA 1621 5.6439 0.0000
5 ENSG00000232774 uncharacterized LOC400221 5.5546 0.0000
6 ENSG00000250548 NA 5.5546 0.0000
7 ENSG00000242266 RN7SL456P RNA, 7SL, cytoplasmic 456, pseudogene 5.4919 0.0000
8 ENSG00000220660 NA 5.4594 0.0000
9 ENSG00000252291 Small nucleolar RNA SNORA31 5.4594 0.0000
10 ENSG00000206887 RNU6-1008P RNA, U6 small nuclear 1008, pseudogene 5.4263 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000211625 IGKV3D-20 immunoglobulin kappa variable 3D-20 -4.7004 0.1655
63818 ENSG00000203747 FCGR3A Fc fragment of IgG receptor IIIa -4.7004 0.1655
63817 ENSG00000201752 RNU6-119P RNA, U6 small nuclear 119, pseudogene -4.7004 0.0133
63816 ENSG00000105793 GTPBP10 GTP binding protein 10 -4.7004 0.1655
63815 ENSG00000088538 DOCK3 dedicator of cytokinesis 3 -4.7004 0.0133
63814 ENSG00000279987 NA -4.6564 0.0011
63813 ENSG00000244331 NA -4.6439 0.1627
63812 ENSG00000243295 NA -4.6439 0.1627
63811 ENSG00000235426 NA -4.6439 0.1627
63810 ENSG00000231513 E2F6P4 E2F transcription factor 6 pseudogene 4 -4.6439 0.1627

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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