SHOGoiN Cell Methylome: GSM1849316

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849316


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M12Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206697 RNY1P8 RNA, Ro-associated Y1 pseudogene 8 7.2946 0.0000
2 ENSG00000184414 IRS3P insulin receptor substrate 3, pseudogene 7.2854 0.0000
3 ENSG00000227264 ACTR3BP5 ACTR3B pseudogene 5 6.9773 0.0000
4 ENSG00000227521 NA 6.9069 0.0000
5 ENSG00000231857 MORF4L1P5 mortality factor 4 like 1 pseudogene 5 6.8455 0.0000
6 ENSG00000181023 OR56B1 olfactory receptor family 56 subfamily B member 1 6.8202 0.0000
7 ENSG00000228638 FCF1P2 FCF1 pseudogene 2 6.7961 0.0000
8 ENSG00000239439 RFKP2 riboflavin kinase pseudogene 2 6.7347 0.0000
9 ENSG00000235467 RPL10AP5 ribosomal protein L10a pseudogene 5 6.6582 0.0000
10 ENSG00000237672 KRR1P1 KRR1, small subunit processome component homolog pseudogene 1 6.6450 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63647 ENSG00000237936 NA -5.3576 0.1166
63646 ENSG00000237593 NA -5.3576 0.0000
63645 ENSG00000235016 SEMA3F-AS1 SEMA3F antisense RNA 1 -5.3576 0.0000
63644 ENSG00000232629 HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 -5.3576 0.1166
63643 ENSG00000222810 RNU2-68P RNA, U2 small nuclear 68, pseudogene -5.3576 0.1166
63642 ENSG00000207299 NA -5.3576 0.1166
63641 ENSG00000206785 SNORA15B-1 small nucleolar RNA, H/ACA box 15B-1 -5.3576 0.1166
63640 ENSG00000202000 RNU1-36P RNA, U1 small nuclear 36, pseudogene -5.3576 0.0042
63639 ENSG00000200650 RNA5SP114 RNA, 5S ribosomal pseudogene 114 -5.3576 0.1166
63638 ENSG00000196507 TCEAL3 transcription elongation factor A like 3 -5.3576 0.1166

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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