SHOGoiN Cell Methylome: GSM1849317

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849317


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6020800-755Sequence Read ArchiveSRP062328SRP062328_M13Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliumBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000136826 KLF4 Kruppel like factor 4 5.1293 0.0000
2 ENSG00000200257 RNU6-97P RNA, U6 small nuclear 97, pseudogene 5.0875 0.0000
3 ENSG00000213361 NA 5.0614 0.0000
4 ENSG00000087589 CASS4 Cas scaffolding protein family member 4 5.0000 0.0000
5 ENSG00000230546 NA 5.0000 0.0000
6 ENSG00000264358 MIR3122 microRNA 3122 5.0000 0.0000
7 ENSG00000253716 MINCR MYC-induced long non-coding RNA 4.9069 0.0000
8 ENSG00000273243 NA 4.9069 0.0000
9 ENSG00000253808 IGHVII-46-1 immunoglobulin heavy variable (II)-46-1 (pseudogene) 4.8580 0.0000
10 ENSG00000225113 NA 4.8204 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000196456 ZNF775 zinc finger protein 775 -4.2615 0.0000
63818 ENSG00000276855 NA -4.2479 0.0290
63817 ENSG00000275126 HIST1H4L histone cluster 1 H4 family member l -4.2479 0.0004
63816 ENSG00000274008 Metazoan signal recognition particle RNA -4.2479 0.0035
63815 ENSG00000270852 NA -4.2479 0.0290
63814 ENSG00000265519 NA -4.2479 0.0290
63813 ENSG00000261046 C2orf69P1 chromosome 2 open reading frame 69 pseudogene 1 -4.2479 0.2506
63812 ENSG00000257193 LINC02385 long intergenic non-protein coding RNA 2385 -4.2479 0.2506
63811 ENSG00000254999 BRK1 BRICK1, SCAR/WAVE actin nucleating complex subunit -4.2479 0.2506
63810 ENSG00000254295 NA -4.2479 0.0004

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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