SHOGoiN Cell Methylome: GSM1849317

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849317


Profile download
5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M13Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000136826 KLF4 Kruppel like factor 4 5.1293 0.0000
2 ENSG00000200257 RNU6-97P RNA, U6 small nuclear 97, pseudogene 5.0875 0.0000
3 ENSG00000213361 NA 5.0614 0.0000
4 ENSG00000087589 CASS4 Cas scaffolding protein family member 4 5.0000 0.0000
5 ENSG00000230546 NA 5.0000 0.0000
6 ENSG00000264358 MIR3122 microRNA 3122 5.0000 0.0000
7 ENSG00000253716 MINCR MYC-induced long non-coding RNA 4.9069 0.0000
8 ENSG00000273243 NA 4.9069 0.0000
9 ENSG00000253808 IGHVII-46-1 immunoglobulin heavy variable (II)-46-1 (pseudogene) 4.8580 0.0000
10 ENSG00000225113 NA 4.8204 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63647 ENSG00000187959 CPSF4L cleavage and polyadenylation specific factor 4 like -3.9069 0.3892
63646 ENSG00000160229 ZNF66 zinc finger protein 66 -3.9069 0.3892
63645 ENSG00000042445 RETSAT retinol saturase -3.9069 0.0670
63644 ENSG00000172428 COPS9 COP9 signalosome subunit 9 -3.9043 0.0007
63643 ENSG00000283213 NA -3.8973 0.0000
63642 ENSG00000122254 HS3ST2 heparan sulfate-glucosamine 3-sulfotransferase 2 -3.8973 0.0000
63641 ENSG00000265673 MIR4508 microRNA 4508 -3.8940 0.0670
63640 ENSG00000248489 LINC02062 long intergenic non-protein coding RNA 2062 -3.8903 0.0000
63639 ENSG00000197251 LINC00336 long intergenic non-protein coding RNA 336 -3.8903 0.0001
63638 ENSG00000262445 NA -3.8889 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...