SHOGoiN Cell Methylome: GSM1849318

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849318


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9210600-755Sequence Read ArchiveSRP062328SRP062328_M14Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliumBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000225591 NA 4.7004 0.0000
2 ENSG00000275024 NA 4.6439 0.0000
3 ENSG00000147885 IFNA16 interferon alpha 16 4.5236 0.0000
4 ENSG00000253389 NA 4.4594 0.0000
5 ENSG00000274705 MIR486-1 microRNA 486-1 4.4594 0.0000
6 ENSG00000283450 MIR486-2 microRNA 486-2 4.4594 0.0000
7 ENSG00000201431 RNU6-1277P RNA, U6 small nuclear 1277, pseudogene 4.4259 0.0000
8 ENSG00000235746 CTBP2P2 C-terminal binding protein 2 pseudogene 2 4.3923 0.0000
9 ENSG00000251221 LINC01337 long intergenic non-protein coding RNA 1337 4.3747 0.0000
10 ENSG00000228999 NA 4.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000240246 NA -3.7004 0.0311
63818 ENSG00000235576 LINC01871 long intergenic non-protein coding RNA 1871 -3.7004 0.2556
63817 ENSG00000233906 NA -3.7004 0.0311
63816 ENSG00000229560 LYARP1 Ly1 antibody reactive pseudogene 1 -3.7004 0.6165
63815 ENSG00000229462 NA -3.7004 0.6165
63814 ENSG00000228984 NA -3.7004 0.2556
63813 ENSG00000226777 FAM30A family with sequence similarity 30 member A -3.7004 0.6165
63812 ENSG00000222123 RNA5SP390 RNA, 5S ribosomal pseudogene 390 -3.7004 0.2556
63811 ENSG00000213956 NA -3.7004 0.6165
63810 ENSG00000212657 KRTAP16-1 keratin associated protein 16-1 -3.7004 0.2556

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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