SHOGoiN Cell Methylome: GSM1849320

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849320


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M16Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229415 SFTA3 surfactant associated 3 7.2384 0.0000
2 ENSG00000102189 EEA1 early endosome antigen 1 7.2095 0.0000
3 ENSG00000221944 TIGD1 tigger transposable element derived 1 7.1799 0.0000
4 ENSG00000284407 MIR5001 microRNA 5001 7.1799 0.0000
5 ENSG00000259152 NA 7.1085 0.0000
6 ENSG00000214374 RPLP2P1 ribosomal protein lateral stalk subunit P2 pseudogene 1 7.0875 0.0000
7 ENSG00000235811 NA 7.0768 0.0000
8 ENSG00000238444 RNU6-893P RNA, U6 small nuclear 893, pseudogene 7.0553 0.0000
9 ENSG00000271025 NA 7.0553 0.0000
10 ENSG00000197045 GMFB glia maturation factor beta 7.0444 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63647 ENSG00000261268 NA -5.9542 0.0004
63646 ENSG00000253081 RNU4ATAC17P RNA, U4atac small nuclear 17, pseudogene -5.9542 0.0213
63645 ENSG00000249951 NA -5.9542 0.0004
63644 ENSG00000237252 NA -5.9542 0.0213
63643 ENSG00000231401 NA -5.9542 0.0213
63642 ENSG00000228952 LINC02041 long intergenic non-protein coding RNA 2041 -5.9542 0.0213
63641 ENSG00000226990 NA -5.9542 0.0213
63640 ENSG00000184270 HIST2H2AB histone cluster 2 H2A family member b -5.9542 0.0004
63639 ENSG00000184260 HIST2H2AC histone cluster 2 H2A family member c -5.9542 0.0004
63638 ENSG00000134186 PRPF38B pre-mRNA processing factor 38B -5.9521 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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