SHOGoiN Cell Methylome: GSM1849320

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849320


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M16Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229415 SFTA3 surfactant associated 3 7.2384 0.0000
2 ENSG00000102189 EEA1 early endosome antigen 1 7.2095 0.0000
3 ENSG00000221944 TIGD1 tigger transposable element derived 1 7.1799 0.0000
4 ENSG00000284407 MIR5001 microRNA 5001 7.1799 0.0000
5 ENSG00000259152 NA 7.1085 0.0000
6 ENSG00000214374 NA 7.0875 0.0000
7 ENSG00000235811 NA 7.0768 0.0000
8 ENSG00000238444 RNU6-893P RNA, U6 small nuclear 893, pseudogene 7.0553 0.0000
9 ENSG00000271025 NA 7.0553 0.0000
10 ENSG00000197045 GMFB glia maturation factor beta 7.0444 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000217228 GSTA12P glutathione S-transferase alpha 12, pseudogene -6.4094 0.0042
63818 ENSG00000179456 ZBTB18 zinc finger and BTB domain containing 18 -6.4094 0.0042
63817 ENSG00000233873 RPL7P44 ribosomal protein L7 pseudogene 44 -6.3958 0.0000
63816 ENSG00000283342 NA -6.3923 0.0042
63815 ENSG00000256682 NA -6.3923 0.0042
63814 ENSG00000256115 LINC02443 long intergenic non-protein coding RNA 2443 -6.3923 0.0042
63813 ENSG00000279630 NA -6.3750 0.0068
63812 ENSG00000249456 NA -6.3750 0.0068
63811 ENSG00000229390 MICD MHC class I polypeptide-related sequence D (pseudogene) -6.3750 0.0068
63810 ENSG00000225656 NA -6.3750 0.0068

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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