SHOGoiN Cell Methylome: GSM1849322

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849322


Profile download
6020500-761Sequence Read ArchiveSRP062328SRP062328_M18Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliumBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000140450 ARRDC4 arrestin domain containing 4 5.5546 0.0000
2 ENSG00000254273 NA 5.3923 0.0000
3 ENSG00000267013 LINC01929 long intergenic non-protein coding RNA 1929 5.3923 0.0000
4 ENSG00000135315 CEP162 centrosomal protein 162 5.3576 0.0000
5 ENSG00000184995 IFNE interferon epsilon 5.3219 0.0000
6 ENSG00000210841 RNU6ATAC26P RNA, U6atac small nuclear 26, pseudogene 5.3219 0.0000
7 ENSG00000237927 NA 5.2849 0.0000
8 ENSG00000240997 RN7SL183P RNA, 7SL, cytoplasmic 183, pseudogene 5.2277 0.0000
9 ENSG00000134538 SLCO1B1 solute carrier organic anion transporter family member 1B1 5.1699 0.0000
10 ENSG00000232719 NA 5.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000172061 LRRC15 leucine rich repeat containing 15 -4.5645 0.0150
63818 ENSG00000198868 MTND4LP30 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 30 -4.5634 0.0000
63817 ENSG00000214825 EI24P3 EI24, autophagy associated transmembrane protein pseudogene 3 -4.5440 0.0146
63816 ENSG00000263963 MIR4461 microRNA 4461 -4.5302 0.0000
63815 ENSG00000247627 MTND4P12 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 12 -4.5302 0.0000
63814 ENSG00000283813 MIR4485 microRNA 4485 -4.5261 0.0000
63813 ENSG00000266416 NA -4.5236 0.4008
63812 ENSG00000265833 NA -4.5236 0.4008
63811 ENSG00000260777 NA -4.5236 0.4008
63810 ENSG00000240584 RN7SL547P RNA, 7SL, cytoplasmic 547, pseudogene -4.5236 0.4008

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...