SHOGoiN Cell Methylome: GSM1900052-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900052-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M1Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000085423 Gm15735 predicted gene 15735 6.4094 0.0000
2 ENSMUSG00000027713 1810062G17Rik RIKEN cDNA 1810062G17 gene 6.2416 0.0000
3 ENSMUSG00000109220 Gm30196 predicted gene, 30196 6.2288 0.0000
4 ENSMUSG00000033623 Pcgf3 Polycomb group RING finger protein 3 6.1898 0.0000
5 ENSMUSG00000105906 Iglc1 NA 6.0875 0.0000
6 ENSMUSG00000106668 Iglj1 NA 6.0875 0.0000
7 ENSMUSG00000111313 Gm18942 predicted gene, 18942 5.8955 0.0000
8 ENSMUSG00000107697 Gm44399 predicted gene, 44399 5.8826 0.0000
9 ENSMUSG00000108016 Gm8039 predicted gene 8039 5.8826 0.0000
10 ENSMUSG00000043008 Klhl6 Kelch-like protein 6 5.8329 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000073608 Gal3st2c NA -5.3576 0.0006
50997 ENSMUSG00000060257 Scrt2 Transcriptional repressor scratch 2 -5.3576 0.0000
50996 ENSMUSG00000037860 Aim2 Interferon-inducible protein AIM2 -5.3576 0.0006
50995 ENSMUSG00000029204 Rhoh ras homolog family member H -5.3576 0.0000
50994 ENSMUSG00000003555 Cyp17a1 Steroid 17-alpha-hydroxylase/17,20 lyase -5.3576 0.0000
50993 ENSMUSG00000097393 D030068K23Rik RIKEN cDNA D030068K23 gene -5.3573 0.0000
50992 ENSMUSG00000036278 Macrod1 O-acetyl-ADP-ribose deacetylase MACROD1 -5.3545 0.0000
50991 ENSMUSG00000111100 Gm47535 predicted gene, 47535 -5.3504 0.0000
50990 ENSMUSG00000083034 Olfr334-ps1 olfactory receptor 334, pseudogene 1 -5.3397 0.0000
50989 ENSMUSG00000025933 Tmem14a transmembrane protein 14A -5.3397 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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