SHOGoiN Cell Methylome: GSM1900052-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900052-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M1Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000085423 Gm15735 predicted gene 15735 6.4094 0.0000
2 ENSMUSG00000027713 1810062G17Rik RIKEN cDNA 1810062G17 gene 6.2416 0.0000
3 ENSMUSG00000109220 Gm30196 predicted gene, 30196 6.2288 0.0000
4 ENSMUSG00000033623 Pcgf3 polycomb group ring finger 3 6.1898 0.0000
5 ENSMUSG00000105906 Iglc1 immunoglobulin lambda constant 1 6.0875 0.0000
6 ENSMUSG00000106668 Iglj1 immunoglobulin lambda joining 1 6.0875 0.0000
7 ENSMUSG00000111313 NA 5.8955 0.0000
8 ENSMUSG00000107697 Gm44399 predicted gene, 44399 5.8826 0.0000
9 ENSMUSG00000108016 Gm8039 predicted gene 8039 5.8826 0.0000
10 ENSMUSG00000043008 Klhl6 kelch-like 6 5.8329 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000047180 Neurl3 neuralized E3 ubiquitin protein ligase 3 -5.5157 0.0000
51075 ENSMUSG00000093306 Gm23802 predicted gene, 23802 -5.5077 0.0000
51074 ENSMUSG00000038212 Mfsd14b major facilitator superfamily domain containing 14B -5.5066 0.0000
51073 ENSMUSG00000106279 NA -5.4919 0.0000
51072 ENSMUSG00000105788 NA -5.4919 0.0000
51071 ENSMUSG00000103206 Gm8515 predicted gene 8515 -5.4919 0.0003
51070 ENSMUSG00000099021 Rn7s1 7S RNA 1 -5.4919 0.0000
51069 ENSMUSG00000087640 Gm14798 predicted gene 14798 -5.4919 0.0000
51068 ENSMUSG00000087362 Gm13710 predicted gene 13710 -5.4919 0.0003
51067 ENSMUSG00000086946 Gm15527 predicted gene 15527 -5.4919 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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