SHOGoiN Cell Methylome: GSM1900052-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900052-2


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9060100-715Sequence Read ArchiveSRP052901SRP052901_M2Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000107697 Gm44399 predicted gene, 44399 6.3399 0.0000
2 ENSMUSG00000110116 4933430A20Rik RIKEN cDNA 4933430A20 gene 6.2479 0.0000
3 ENSMUSG00000110321 Gm39164 predicted gene, 39164 6.2479 0.0000
4 ENSMUSG00000109220 Gm30196 predicted gene, 30196 6.2095 0.0000
5 ENSMUSG00000097694 G730013B05Rik RIKEN cDNA G730013B05 gene 6.0618 0.0000
6 ENSMUSG00000111180 NA 5.9962 0.0000
7 ENSMUSG00000076749 Tcrg-C1 T cell receptor gamma, constant 1 5.9384 0.0000
8 ENSMUSG00000084956 Gm16194 predicted gene 16194 5.9069 0.0000
9 ENSMUSG00000021256 Vash1 vasohibin 1 5.8329 0.0000
10 ENSMUSG00000100843 Gm8307 predicted gene 8307 5.8329 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000020491 2810021J22Rik RIKEN cDNA 2810021J22 gene -5.5236 0.0003
51075 ENSMUSG00000020936 Nmt1 N-myristoyltransferase 1 -5.5200 0.0000
51074 ENSMUSG00000089887 4930428N03Rik RIKEN cDNA 4930428N03 gene -5.5118 0.0000
51073 ENSMUSG00000023882 Zfp54 zinc finger protein 54 -5.5005 0.0000
51072 ENSMUSG00000037474 Dtl denticleless E3 ubiquitin protein ligase -5.4980 0.0000
51071 ENSMUSG00000109992 Gm45650 predicted gene 45650 -5.4919 0.0000
51070 ENSMUSG00000107659 Gm44170 predicted gene, 44170 -5.4919 0.0003
51069 ENSMUSG00000088960 Gm22090 predicted gene, 22090 -5.4919 0.0003
51068 ENSMUSG00000083337 Gm11539 predicted gene 11539 -5.4919 0.0000
51067 ENSMUSG00000074219 Gm10644 predicted gene 10644 -5.4919 0.0003

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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