SHOGoiN Cell Methylome: GSM1900052-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900052-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M2Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000107697 Gm44399 predicted gene, 44399 6.3399 0.0000
2 ENSMUSG00000110116 4933430A20Rik RIKEN cDNA 4933430A20 gene 6.2479 0.0000
3 ENSMUSG00000110321 Gm39164 predicted gene, 39164 6.2479 0.0000
4 ENSMUSG00000109220 Gm30196 predicted gene, 30196 6.2095 0.0000
5 ENSMUSG00000097694 G730013B05Rik RIKEN cDNA G730013B05 gene 6.0618 0.0000
6 ENSMUSG00000111180 Gm39348 predicted gene, 39348 5.9962 0.0000
7 ENSMUSG00000076749 Tcrg-C1 NA 5.9384 0.0000
8 ENSMUSG00000084956 Gm16194 predicted gene 16194 5.9069 0.0000
9 ENSMUSG00000021256 Vash1 vasohibin 1 5.8329 0.0000
10 ENSMUSG00000100843 Gm8307 predicted gene 8307 5.8329 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000026110 Mgat4a Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A soluble form -5.3683 0.0000
50997 ENSMUSG00000108572 Gm44883 predicted gene 44883 -5.3576 0.0000
50996 ENSMUSG00000101085 Gm8531 predicted gene 8531 -5.3576 0.0006
50995 ENSMUSG00000093540 4930505M18Rik RIKEN cDNA 4930505M18 gene -5.3576 0.0000
50994 ENSMUSG00000091994 E130317F20Rik RIKEN cDNA E130317F20 gene -5.3576 0.0000
50993 ENSMUSG00000087140 Gm11376 predicted gene 11376 -5.3576 0.0000
50992 ENSMUSG00000086693 A730081D07Rik RIKEN cDNA A730081D07 gene -5.3576 0.0000
50991 ENSMUSG00000084149 Gm12944 predicted gene 12944 -5.3576 0.0000
50990 ENSMUSG00000072575 Eddm3b NA -5.3576 0.0006
50989 ENSMUSG00000058093 Zfp729b zinc finger protein 729b -5.3576 0.0006

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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