SHOGoiN Cell Methylome: GSM1900054-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900054-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M3Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000021798 Ldb3 LIM domain binding 3 6.0444 0.0000
2 ENSMUSG00000104920 Gm43215 predicted gene 43215 5.8329 0.0000
3 ENSMUSG00000038750 Omt2b oocyte maturation, beta 5.7279 0.0000
4 ENSMUSG00000090802 Gm8074 predicted gene 8074 5.7279 0.0000
5 ENSMUSG00000107464 Gm44150 predicted gene, 44150 5.7279 0.0000
6 ENSMUSG00000034785 Dio1 deiodinase, iodothyronine, type I 5.6724 0.0000
7 ENSMUSG00000024560 Cxxc1 CXXC finger 1 (PHD domain) 5.6430 0.0000
8 ENSMUSG00000111052 NA 5.5574 0.0000
9 ENSMUSG00000046840 Hnf4aos hepatic nuclear factor 4 alpha, opposite strand 5.5236 0.0000
10 ENSMUSG00000084894 Gm13834 predicted gene 13834 5.4978 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000033054 Npat nuclear protein in the AT region -5.2224 0.0000
51075 ENSMUSG00000092502 Gm4252 predicted gene 4252 -5.2199 0.0000
51074 ENSMUSG00000110695 Gm45766 predicted gene 45766 -5.2095 0.0000
51073 ENSMUSG00000039714 Cplx3 complexin 3 -5.2095 0.0009
51072 ENSMUSG00000030443 Zfp583 zinc finger protein 583 -5.2095 0.0000
51071 ENSMUSG00000026204 Ptprn protein tyrosine phosphatase, receptor type, N -5.2095 0.0009
51070 ENSMUSG00000069196 Gm10161 predicted pseudogene 10161 -5.1886 0.0000
51069 ENSMUSG00000004317 Clcn5 chloride channel, voltage-sensitive 5 -5.1859 0.0000
51068 ENSMUSG00000039738 Slx4 SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae) -5.1827 0.0000
51067 ENSMUSG00000026875 Traf1 TNF receptor-associated factor 1 -5.1725 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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