SHOGoiN Cell Methylome: GSM1900054-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900054-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M3Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000021798 Ldb3 LIM domain-binding protein 3 6.0444 0.0000
2 ENSMUSG00000104920 Gm43215 predicted gene 43215 5.8329 0.0000
3 ENSMUSG00000038750 Omt2b NA 5.7279 0.0000
4 ENSMUSG00000090802 Gm8074 predicted gene 8074 5.7279 0.0000
5 ENSMUSG00000107464 Gm44150 predicted gene, 44150 5.7279 0.0000
6 ENSMUSG00000034785 Dio1 type I iodothyronine deiodinase 5.6724 0.0000
7 ENSMUSG00000024560 Cxxc1 CXXC-type zinc finger protein 1 5.6430 0.0000
8 ENSMUSG00000111052 Gm20139 predicted gene, 20139 5.5574 0.0000
9 ENSMUSG00000046840 Hnf4aos NA 5.5236 0.0000
50989 ENSMUSG00000033419 Snap91 synaptosomal-associated protein 91 -5.0444 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000051235 Gen1 Flap endonuclease GEN homolog 1 -5.0464 0.0000
50997 ENSMUSG00000110054 Gm18851 predicted gene, 18851 -5.0444 0.0024
50996 ENSMUSG00000105987 AI506816 expressed sequence AI506816 -5.0444 0.0000
50995 ENSMUSG00000096832 Mir3096 microRNA 3096 -5.0444 0.0000
50994 ENSMUSG00000094388 Gm8783 predicted pseudogene 8783 -5.0444 0.0000
50993 ENSMUSG00000082517 Gm5757 predicted gene 5757 -5.0444 0.0024
50992 ENSMUSG00000052012 Olfr796 olfactory receptor family 10 subfamily P member 1 -5.0444 0.0024
50991 ENSMUSG00000051469 Zfp24 zinc finger protein 24 -5.0444 0.0000
50990 ENSMUSG00000036036 Zfp57 zinc finger protein 57 -5.0444 0.0024
50989 ENSMUSG00000033419 Snap91 synaptosomal-associated protein 91 -5.0444 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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