SHOGoiN Cell Methylome: GSM1900054-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900054-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M4Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000104920 Gm43215 predicted gene 43215 6.0768 0.0000
2 ENSMUSG00000038750 Omt2b oocyte maturation, beta 6.0224 0.0000
3 ENSMUSG00000090802 Gm8074 predicted gene 8074 6.0224 0.0000
4 ENSMUSG00000018126 Baiap2l2 BAI1-associated protein 2-like 2 5.9542 0.0000
5 ENSMUSG00000021798 Ldb3 LIM domain binding 3 5.6724 0.0000
6 ENSMUSG00000111052 NA 5.6242 0.0000
7 ENSMUSG00000034768 Asb16 ankyrin repeat and SOCS box-containing 16 5.5691 0.0000
8 ENSMUSG00000090224 Gm15974 predicted gene 15974 5.5236 0.0000
9 ENSMUSG00000024560 Cxxc1 CXXC finger 1 (PHD domain) 5.5156 0.0000
10 ENSMUSG00000053896 4933409G03Rik RIKEN cDNA 4933409G03 gene 5.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000071659 Hnrnpul2 heterogeneous nuclear ribonucleoprotein U-like 2 -5.1964 0.0000
51075 ENSMUSG00000072584 Gm7489 predicted gene 7489 -5.1897 0.0000
51074 ENSMUSG00000108154 Gm44033 predicted gene, 44033 -5.1699 0.0000
51073 ENSMUSG00000108137 Gm44053 predicted gene, 44053 -5.1699 0.0000
51072 ENSMUSG00000106562 Gm5981 predicted gene 5981 -5.1699 0.0000
51071 ENSMUSG00000095740 Gm22474 predicted gene, 22474 -5.1699 0.0009
51070 ENSMUSG00000079434 Neu2 neuraminidase 2 -5.1699 0.0000
51069 ENSMUSG00000064177 Ghrl ghrelin -5.1699 0.0000
51068 ENSMUSG00000050328 Hoxc12 homeobox C12 -5.1699 0.0000
51067 ENSMUSG00000044600 Smim7 small integral membrane protein 7 -5.1699 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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