SHOGoiN Cell Methylome: GSM1900054-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900054-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M4Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000104920 Gm43215 predicted gene 43215 6.0768 0.0000
2 ENSMUSG00000038750 Omt2b NA 6.0224 0.0000
3 ENSMUSG00000090802 Gm8074 predicted gene 8074 6.0224 0.0000
4 ENSMUSG00000018126 Baiap2l2 Brain-specific angiosis inhibitor 1-associated protein 2-like protein 2 5.9542 0.0000
5 ENSMUSG00000021798 Ldb3 LIM domain-binding protein 3 5.6724 0.0000
6 ENSMUSG00000111052 Gm20139 predicted gene, 20139 5.6242 0.0000
7 ENSMUSG00000034768 Asb16 Ankyrin repeat and SOCS box protein 16 5.5691 0.0000
8 ENSMUSG00000090224 Gm15974 predicted gene 15974 5.5236 0.0000
9 ENSMUSG00000024560 Cxxc1 CXXC-type zinc finger protein 1 5.5156 0.0000
10 ENSMUSG00000053896 4933409G03Rik RIKEN cDNA 4933409G03 gene 5.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000015961 Adss adenylosuccinate synthetase, non muscle -5.0166 0.0000
50997 ENSMUSG00000029524 Sirt4 NAD-dependent protein lipoamidase sirtuin-4, mitochondrial -5.0166 0.0000
50996 ENSMUSG00000033054 Npat Protein NPAT -5.0084 0.0000
50995 ENSMUSG00000012640 Zfp715 zinc finger protein 715 -5.0072 0.0000
50994 ENSMUSG00000020464 Pnpt1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial -5.0067 0.0000
50993 ENSMUSG00000082001 Gm15607 predicted gene 15607 -5.0054 0.0000
50992 ENSMUSG00000056648 Hoxb8 Homeobox protein Hox-B8 -5.0050 0.0000
50991 ENSMUSG00000046756 Mrps7 28S ribosomal protein S7, mitochondrial -5.0037 0.0000
50990 ENSMUSG00000109330 Gm44754 predicted gene 44754 -5.0000 0.0000
50989 ENSMUSG00000108113 Zim2 zinc finger, imprinted 2 -5.0000 0.0022

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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