SHOGoiN Cell Methylome: GSM1900056-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900056-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M5Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000095446 Gm25730 predicted gene, 25730 5.5546 0.0000
2 ENSMUSG00000080749 Gm12134 predicted gene 12134 5.0875 0.0000
3 ENSMUSG00000098879 Mir7675 microRNA 7675 5.0875 0.0000
4 ENSMUSG00000055725 Paqr3 progestin and adipoQ receptor family member III 5.0403 0.0000
5 ENSMUSG00000107490 Gm44058 predicted gene, 44058 5.0000 0.0000
6 ENSMUSG00000110589 Gm45754 predicted gene 45754 4.9537 0.0000
7 ENSMUSG00000106479 Mir721 microRNA 721 4.9069 0.0000
8 ENSMUSG00000042306 S100a14 Protein S100-A14 4.8824 0.0000
9 ENSMUSG00000045427 Hnrnph2 Heteroous nuclear ribonucleoprotein H2 Heteroous nuclear ribonucleoprotein H2, N-terminally processed 4.8580 0.0000
10 ENSMUSG00000062638 Btnl1 Butyrophilin-like protein 1 4.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000025968 Ndufs1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial -4.2609 0.0000
50997 ENSMUSG00000039461 Tcta T cell leukemia translocation altered gene -4.2594 0.0000
50996 ENSMUSG00000045515 Pou3f3 POU domain, class 3, transcription factor 3 -4.2538 0.0000
50995 ENSMUSG00000099155 Gm27805 predicted gene, 27805 -4.2535 0.0000
50994 ENSMUSG00000112916 Gm18622 predicted gene, 18622 -4.2479 0.0002
50993 ENSMUSG00000112887 Gm47961 predicted gene, 47961 -4.2479 0.0002
50992 ENSMUSG00000112124 Gm19056 predicted gene, 19056 -4.2479 0.0002
50991 ENSMUSG00000108923 4933431C10Rik RIKEN cDNA 4933431C10 gene -4.2479 0.0000
50990 ENSMUSG00000108460 Gm39041 predicted gene, 39041 -4.2479 0.0000
50989 ENSMUSG00000105610 Gm47313 predicted gene, 47313 -4.2479 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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