SHOGoiN Cell Methylome: GSM1900056-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900056-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M5Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000095446 Gm25730 predicted gene, 25730 5.5546 0.0000
2 ENSMUSG00000080749 Gm12134 predicted gene 12134 5.0875 0.0000
3 ENSMUSG00000098879 Mir7675 microRNA 7675 5.0875 0.0000
4 ENSMUSG00000055725 Paqr3 progestin and adipoQ receptor family member III 5.0403 0.0000
5 ENSMUSG00000107490 Gm44058 predicted gene, 44058 5.0000 0.0000
6 ENSMUSG00000110589 Gm45754 predicted gene 45754 4.9537 0.0000
7 ENSMUSG00000106479 Mir721 microRNA 721 4.9069 0.0000
8 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 4.8824 0.0000
9 ENSMUSG00000045427 Hnrnph2 heterogeneous nuclear ribonucleoprotein H2 4.8580 0.0000
10 ENSMUSG00000062638 Btnl1 butyrophilin-like 1 4.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000029236 Nmu neuromedin U -4.4973 0.0000
51075 ENSMUSG00000024078 Ttc27 tetratricopeptide repeat domain 27 -4.4872 0.0000
51074 ENSMUSG00000013622 Atraid all-trans retinoic acid induced differentiation factor -4.4836 0.0000
51073 ENSMUSG00000006641 Slc5a6 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 -4.4836 0.0000
51072 ENSMUSG00000097365 C030034L19Rik RIKEN cDNA C030034L19 gene -4.4834 0.0000
51071 ENSMUSG00000088229 Gm22604 predicted gene, 22604 -4.4834 0.0000
51070 ENSMUSG00000039599 Fam149b family with sequence similarity 149, member B -4.4821 0.0000
51069 ENSMUSG00000096968 Gm26620 predicted gene, 26620 -4.4720 0.0000
51068 ENSMUSG00000104513 Gm29813 predicted gene, 29813 -4.4594 0.0621
51067 ENSMUSG00000102616 Gm37841 predicted gene, 37841 -4.4594 0.0621

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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