SHOGoiN Cell Methylome: GSM1900056-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900056-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M6Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000095446 Gm25730 predicted gene, 25730 5.2479 0.0000
2 ENSMUSG00000106138 Gm44392 predicted gene, 44392 5.2095 0.0000
3 ENSMUSG00000110589 Gm45754 predicted gene 45754 5.2095 0.0000
4 ENSMUSG00000098879 Mir7675 microRNA 7675 5.1699 0.0000
5 ENSMUSG00000100969 1700030N03Rik RIKEN cDNA 1700030N03 gene 5.1293 0.0000
6 ENSMUSG00000055725 Paqr3 progestin and adipoQ receptor family member III 5.1159 0.0000
7 ENSMUSG00000042306 S100a14 Protein S100-A14 5.1011 0.0000
8 ENSMUSG00000060149 BC002059 cDNA sequence BC002059 5.0444 0.0000
9 ENSMUSG00000022425 Enpp2 Ectonucleotide pyrophosphatase/phosphodiesterase family member 2 4.9542 0.0000
10 ENSMUSG00000045427 Hnrnph2 Heteroous nuclear ribonucleoprotein H2 Heteroous nuclear ribonucleoprotein H2, N-terminally processed 4.9542 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000098696 Gm27617 predicted gene, 27617 -4.3219 0.1007
50997 ENSMUSG00000090641 Zfp712 NA -4.3219 0.0000
50996 ENSMUSG00000088563 Gm23779 predicted gene, 23779 -4.3219 0.0001
50995 ENSMUSG00000088040 Gm23329 predicted gene, 23329 -4.3219 0.1007
50994 ENSMUSG00000087550 Gm14343 predicted gene 14343 -4.3219 0.0001
50993 ENSMUSG00000086822 5330413P13Rik RIKEN cDNA 5330413P13 gene -4.3219 0.0028
50992 ENSMUSG00000084637 n-R5s14 nuclear encoded rRNA 5S 14 -4.3219 0.0000
50991 ENSMUSG00000083469 Gm14281 predicted gene 14281 -4.3219 0.0028
50990 ENSMUSG00000083401 Gm13506 predicted gene 13506 -4.3219 0.0028
50989 ENSMUSG00000077998 Mir466f-2 microRNA 466f-2 -4.3219 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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