SHOGoiN Cell Methylome: GSM1900056-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900056-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M6Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000095446 Gm25730 predicted gene, 25730 5.2479 0.0000
2 ENSMUSG00000106138 Gm44392 predicted gene, 44392 5.2095 0.0000
3 ENSMUSG00000110589 Gm45754 predicted gene 45754 5.2095 0.0000
4 ENSMUSG00000098879 Mir7675 microRNA 7675 5.1699 0.0000
5 ENSMUSG00000100969 1700030N03Rik RIKEN cDNA 1700030N03 gene 5.1293 0.0000
6 ENSMUSG00000055725 Paqr3 progestin and adipoQ receptor family member III 5.1159 0.0000
7 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 5.1011 0.0000
8 ENSMUSG00000060149 BC002059 cDNA sequence BC002059 5.0444 0.0000
9 ENSMUSG00000022425 Enpp2 ectonucleotide pyrophosphatase/phosphodiesterase 2 4.9542 0.0000
10 ENSMUSG00000045427 Hnrnph2 heterogeneous nuclear ribonucleoprotein H2 4.9542 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000031200 Mtcp1 mature T cell proliferation 1 -4.5850 0.0000
51075 ENSMUSG00000022876 Samsn1 SAM domain, SH3 domain and nuclear localization signals, 1 -4.5850 0.0000
51074 ENSMUSG00000021939 Ctsb cathepsin B -4.5640 0.0000
51073 ENSMUSG00000090129 Olfr287 olfactory receptor 287 -4.5543 0.0012
51072 ENSMUSG00000023885 Thbs2 thrombospondin 2 -4.5370 0.0000
51071 ENSMUSG00000082829 Gm15780 predicted gene 15780 -4.5236 0.0000
51070 ENSMUSG00000065198 Gm23462 predicted gene, 23462 -4.5236 0.0000
51069 ENSMUSG00000029864 Gstk1 glutathione S-transferase kappa 1 -4.5236 0.0000
51068 ENSMUSG00000026975 Dph7 diphthamine biosynethesis 7 -4.5236 0.0000
51067 ENSMUSG00000074479 Gm10704 predicted pseudogene 10704 -4.5227 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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