SHOGoiN Cell Methylome: GSM1900058-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900058-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M7Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000037752 Xkr8 X-linked Kx blood group related 8 6.0661 0.0000
2 ENSMUSG00000101746 2310043L19Rik RIKEN cDNA 2310043L19 gene 5.9773 0.0000
3 ENSMUSG00000087538 Gm16341 predicted gene 16341 5.9069 0.0000
4 ENSMUSG00000110502 Gm8804 predicted gene 8804 5.8609 0.0000
5 ENSMUSG00000091908 Gm17231 predicted gene 17231 5.8580 0.0000
6 ENSMUSG00000111749 NA 5.8329 0.0000
7 ENSMUSG00000080242 Gm15487 predicted gene 15487 5.7288 0.0000
8 ENSMUSG00000096215 Smim22 small integral membrane protein 22 5.7004 0.0000
9 ENSMUSG00000106967 Gm42477 predicted gene 42477 5.7004 0.0000
10 ENSMUSG00000109688 Gm34597 predicted gene, 34597 5.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000111008 NA -5.2854 0.0000
51075 ENSMUSG00000107790 Olfr783-ps1 olfactory receptor 783, pseudogene 1 -5.2854 0.0000
51074 ENSMUSG00000104225 4930517L18Rik RIKEN cDNA 4930517L18 gene -5.2854 0.0017
51073 ENSMUSG00000103091 Gm37555 predicted gene, 37555 -5.2854 0.0000
51072 ENSMUSG00000102579 Gm37965 predicted gene, 37965 -5.2854 0.0017
51071 ENSMUSG00000100265 Gm28363 predicted gene 28363 -5.2854 0.0000
51070 ENSMUSG00000096182 Gm23308 predicted gene, 23308 -5.2854 0.0017
51069 ENSMUSG00000090257 Gm4524 predicted gene 4524 -5.2854 0.0017
51068 ENSMUSG00000088352 Gm24013 predicted gene, 24013 -5.2854 0.0000
51067 ENSMUSG00000075122 Cd80 CD80 antigen -5.2854 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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