SHOGoiN Cell Methylome: GSM1900058-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900058-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M7Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000037752 Xkr8 X-linked Kx blood group related 8 6.0661 0.0000
2 ENSMUSG00000101746 2310043L19Rik RIKEN cDNA 2310043L19 gene 5.9773 0.0000
3 ENSMUSG00000087538 Gm16341 predicted gene 16341 5.9069 0.0000
4 ENSMUSG00000110502 Gm8804 predicted gene 8804 5.8609 0.0000
5 ENSMUSG00000091908 Gm17231 predicted gene 17231 5.8580 0.0000
6 ENSMUSG00000111749 Gm47927 predicted gene, 47927 5.8329 0.0000
7 ENSMUSG00000080242 Gm15487 NA 5.7288 0.0000
8 ENSMUSG00000096215 Smim22 small integral membrane protein 22 5.7004 0.0000
9 ENSMUSG00000106967 Gm42477 predicted gene 42477 5.7004 0.0000
10 ENSMUSG00000109688 Gm34597 predicted gene, 34597 5.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000029205 Chrna9 cholinergic receptor, nicotinic, alpha polypeptide 9 -5.1075 0.0000
50997 ENSMUSG00000087990 Gm25058 predicted gene, 25058 -5.1072 0.0000
50996 ENSMUSG00000017764 Zswim1 zinc finger SWIM-type containing 1 -5.1004 0.0000
50995 ENSMUSG00000066324 Impad1 Inositol monophosphatase 3 -5.0997 0.0000
50994 ENSMUSG00000045591 Olig3 Oligodendrocyte transcription factor 3 -5.0992 0.0000
50993 ENSMUSG00000085912 Trp53cor1 tumor protein p53 pathway corepressor 1 -5.0986 0.0000
50992 ENSMUSG00000049538 Adamts16 A disintegrin and metalloproteinase with thrombospondin motifs 16 -5.0936 0.0000
50991 ENSMUSG00000080727 C920021L13Rik RIKEN cDNA C920021L13 gene -5.0913 0.0000
50990 ENSMUSG00000073591 Pcdhb22 NA -5.0894 0.0000
50989 ENSMUSG00000111761 9230112J17Rik RIKEN cDNA 9230112J17 gene -5.0875 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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