SHOGoiN Cell Methylome: GSM1900058-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900058-2


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9060100-715Sequence Read ArchiveSRP052901SRP052901_M8Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105558 Gm5855 predicted gene 5855 6.2668 0.0000
2 ENSMUSG00000106095 2010110G14Rik RIKEN cDNA 2010110G14 gene 6.2668 0.0000
3 ENSMUSG00000087538 Gm16341 predicted gene 16341 6.1293 0.0000
4 ENSMUSG00000080242 Gm15487 predicted gene 15487 6.1189 0.0000
5 ENSMUSG00000112364 NA 5.9069 0.0000
6 ENSMUSG00000109688 Gm34597 predicted gene, 34597 5.7279 0.0000
7 ENSMUSG00000072844 G530011O06Rik RIKEN cDNA G530011O06 gene 5.6724 0.0000
8 ENSMUSG00000096215 Smim22 small integral membrane protein 22 5.6439 0.0000
9 ENSMUSG00000106967 Gm42477 predicted gene 42477 5.6439 0.0000
10 ENSMUSG00000109890 AU023762 expressed sequence AU023762 5.5546 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000107061 Gm19590 predicted gene, 19590 -5.2760 0.0000
51075 ENSMUSG00000082258 Gm15289 predicted gene 15289 -5.2760 0.0000
51074 ENSMUSG00000081277 Gm15285 predicted gene 15285 -5.2760 0.0000
51073 ENSMUSG00000108820 Gm44620 predicted gene 44620 -5.2744 0.0000
51072 ENSMUSG00000022434 Fam118a family with sequence similarity 118, member A -5.2711 0.0000
51071 ENSMUSG00000031174 Rpgr retinitis pigmentosa GTPase regulator -5.2642 0.0000
51070 ENSMUSG00000097763 Gm26636 predicted gene, 26636 -5.2639 0.0000
51069 ENSMUSG00000105415 Gm44364 predicted gene, 44364 -5.2603 0.0000
51068 ENSMUSG00000060032 H2afj H2A histone family, member J -5.2603 0.0000
51067 ENSMUSG00000086193 Gm11508 predicted gene 11508 -5.2597 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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