SHOGoiN Cell Methylome: GSM1900058-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900058-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M8Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105558 Gm5855 predicted gene 5855 6.2668 0.0000
2 ENSMUSG00000106095 2010110G14Rik RIKEN cDNA 2010110G14 gene 6.2668 0.0000
3 ENSMUSG00000087538 Gm16341 predicted gene 16341 6.1293 0.0000
4 ENSMUSG00000080242 Gm15487 NA 6.1189 0.0000
5 ENSMUSG00000112364 4930503E24Rik RIKEN cDNA 4930503E24 gene 5.9069 0.0000
6 ENSMUSG00000109688 Gm34597 predicted gene, 34597 5.7279 0.0000
7 ENSMUSG00000072844 G530011O06Rik RIKEN cDNA G530011O06 gene 5.6724 0.0000
8 ENSMUSG00000096215 Smim22 small integral membrane protein 22 5.6439 0.0000
9 ENSMUSG00000106967 Gm42477 predicted gene 42477 5.6439 0.0000
10 ENSMUSG00000109890 AU023762 expressed sequence AU023762 5.5546 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000096182 Gm23308 predicted gene, 23308 -5.1293 0.0042
50997 ENSMUSG00000088124 Gm22867 predicted gene, 22867 -5.1293 0.0042
50996 ENSMUSG00000086806 Gm13054 predicted gene 13054 -5.1293 0.0042
50995 ENSMUSG00000084951 Mipepos mitochondrial intermediate peptidase, opposite strand -5.1293 0.0000
50994 ENSMUSG00000084437 Gm23428 predicted gene, 23428 -5.1293 0.0000
50993 ENSMUSG00000078713 Tomm5 Mitochondrial import receptor subunit TOM5 homolog -5.1293 0.0042
50992 ENSMUSG00000062483 Vmn1r171 vomeronasal 1 receptor 171 -5.1293 0.0000
50991 ENSMUSG00000041616 Nppa natriuretic peptide type A -5.1293 0.0042
50990 ENSMUSG00000036743 Psma8 Proteasome subunit alpha type-7-like -5.1293 0.0000
50989 ENSMUSG00000029727 Cyp3a13 Cytochrome P450 3A13 -5.1293 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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