SHOGoiN Cell Methylome: GSM1900060-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900060-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M9Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000108258 Gm43913 predicted gene, 43913 7.0875 0.0000
2 ENSMUSG00000098187 Gm8927 predicted gene 8927 6.9069 0.0000
3 ENSMUSG00000076064 Mir690 microRNA 690 6.7841 0.0000
4 ENSMUSG00000080561 Gm26042 predicted gene, 26042 6.7324 0.0000
5 ENSMUSG00000097596 Gm26673 predicted gene, 26673 6.6072 0.0000
6 ENSMUSG00000029191 Rfc1 replication factor C (activator 1) 1 6.5999 0.0000
7 ENSMUSG00000098076 Gm6981 predicted pseudogene 6981 6.5850 0.0000
8 ENSMUSG00000107785 Gm45083 predicted gene 45083 6.5236 0.0000
9 ENSMUSG00000032295 Man2c1 Alpha-mannosidase 2C1 6.4971 0.0000
10 ENSMUSG00000111850 Gm47829 predicted gene, 47829 6.4971 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000087103 Gm13344 predicted gene 13344 -5.8508 0.0000
50997 ENSMUSG00000042699 Dhx9 DExH-box helicase 9 -5.8504 0.0000
50996 ENSMUSG00000041396 Mettl18 Mus musculus methyltransferase like 18 (Mettl18), transcript variant 2, mRNA. -5.8496 0.0000
50995 ENSMUSG00000027166 Dnajc24 DnaJ heat shock protein family (Hsp40) member C24 -5.8466 0.0000
50994 ENSMUSG00000111056 Gm39317 predicted gene, 39317 -5.8454 0.0000
50993 ENSMUSG00000067872 Ccdc87 Coiled-coil domain-containing protein 87 -5.8445 0.0000
50992 ENSMUSG00000034108 Ccs Copper chaperone for superoxide dismutase -5.8445 0.0000
50991 ENSMUSG00000055976 Cldn23 Claudin-23 -5.8434 0.0000
50990 ENSMUSG00000021906 Oxnad1 Oxidoreductase NAD-binding domain-containing protein 1 -5.8423 0.0000
50989 ENSMUSG00000025362 Rps26 ribosomal protein S26 -5.8415 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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