SHOGoiN Cell Methylome: GSM1900060-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900060-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M9Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000108258 Gm43913 predicted gene, 43913 7.0875 0.0000
2 ENSMUSG00000098187 Gm8927 predicted gene 8927 6.9069 0.0000
3 ENSMUSG00000076064 Mir690 microRNA 690 6.7841 0.0000
4 ENSMUSG00000080561 Gm26042 predicted gene, 26042 6.7324 0.0000
5 ENSMUSG00000097596 Gm26673 predicted gene, 26673 6.6072 0.0000
6 ENSMUSG00000029191 Rfc1 replication factor C (activator 1) 1 6.5999 0.0000
7 ENSMUSG00000098076 Gm6981 predicted pseudogene 6981 6.5850 0.0000
8 ENSMUSG00000107785 Gm45083 predicted gene 45083 6.5236 0.0000
9 ENSMUSG00000032295 Man2c1 mannosidase, alpha, class 2C, member 1 6.4971 0.0000
10 ENSMUSG00000111850 NA 6.4971 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000044337 Ackr3 atypical chemokine receptor 3 -5.9619 0.0000
51075 ENSMUSG00000046062 Ppp1r15b protein phosphatase 1, regulatory (inhibitor) subunit 15b -5.9542 0.0000
51074 ENSMUSG00000025352 Gdf11 growth differentiation factor 11 -5.9528 0.0000
51073 ENSMUSG00000019647 Sema6a sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A -5.9463 0.0000
51072 ENSMUSG00000045518 Onecut3 one cut domain, family member 3 -5.9407 0.0000
51071 ENSMUSG00000074671 Tspyl3 TSPY-like 3 -5.9384 0.0000
51070 ENSMUSG00000030051 Aplf aprataxin and PNKP like factor -5.9343 0.0000
51069 ENSMUSG00000105857 Gm42817 predicted gene 42817 -5.9307 0.0000
51068 ENSMUSG00000021276 Cinp cyclin-dependent kinase 2 interacting protein -5.9307 0.0000
51067 ENSMUSG00000021275 Tecpr2 tectonin beta-propeller repeat containing 2 -5.9307 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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