SHOGoiN Cell Methylome: GSM1900060-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900060-2


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9060100-715Sequence Read ArchiveSRP052901SRP052901_M10Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000108258 Gm43913 predicted gene, 43913 6.9887 0.0000
2 ENSMUSG00000072647 Adam1a a disintegrin and metallopeptidase domain 1a 6.8074 0.0000
3 ENSMUSG00000079029 Gm5662 predicted gene 5662 6.7615 0.0000
4 ENSMUSG00000097596 Gm26673 predicted gene, 26673 6.7481 0.0000
5 ENSMUSG00000098076 Gm6981 predicted pseudogene 6981 6.5546 0.0000
6 ENSMUSG00000076064 Mir690 microRNA 690 6.5356 0.0000
7 ENSMUSG00000103043 Gm37306 predicted gene, 37306 6.5183 0.0000
8 ENSMUSG00000031848 Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated 6.5165 0.0000
9 ENSMUSG00000107161 Gm43850 predicted gene 43850 6.4919 0.0000
10 ENSMUSG00000109888 Gm45600 predicted gene 45600 6.4434 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000102825 Gm36990 predicted gene, 36990 -6.0169 0.0000
51075 ENSMUSG00000027663 Zmat3 zinc finger matrin type 3 -6.0169 0.0000
51074 ENSMUSG00000035105 Egln3 egl-9 family hypoxia-inducible factor 3 -6.0125 0.0000
51073 ENSMUSG00000073684 Faap20 Fanconi anemia core complex associated protein 20 -6.0125 0.0000
51072 ENSMUSG00000106106 NA -6.0099 0.0000
51071 ENSMUSG00000006288 Ttc5 tetratricopeptide repeat domain 5 -6.0074 0.0000
51070 ENSMUSG00000104195 B230377A18Rik RIKEN cDNA B230377A18 gene -6.0000 0.0000
51069 ENSMUSG00000089684 Gm14163 predicted gene 14163 -6.0000 0.0000
51068 ENSMUSG00000046062 Ppp1r15b protein phosphatase 1, regulatory (inhibitor) subunit 15b -6.0000 0.0000
51067 ENSMUSG00000042428 Mgat3 mannoside acetylglucosaminyltransferase 3 -6.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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