SHOGoiN Cell Methylome: GSM1900060-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900060-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M10Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000108258 Gm43913 predicted gene, 43913 6.9887 0.0000
2 ENSMUSG00000072647 Adam1a Disintegrin and metalloproteinase domain-containing protein 1a 6.8074 0.0000
3 ENSMUSG00000079029 Gm5662 NA 6.7615 0.0000
4 ENSMUSG00000097596 Gm26673 predicted gene, 26673 6.7481 0.0000
5 ENSMUSG00000098076 Gm6981 predicted pseudogene 6981 6.5546 0.0000
6 ENSMUSG00000076064 Mir690 microRNA 690 6.5356 0.0000
7 ENSMUSG00000103043 Gm37306 predicted gene, 37306 6.5183 0.0000
8 ENSMUSG00000031848 Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated 6.5165 0.0000
9 ENSMUSG00000107161 Gm43850 predicted gene 43850 6.4919 0.0000
10 ENSMUSG00000109888 Gm45600 predicted gene 45600 6.4434 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000058192 Zfp846 zinc finger protein 846 -5.8811 0.0000
50997 ENSMUSG00000031387 Renbp N-acylglucosamine 2-epimerase -5.8791 0.0000
50996 ENSMUSG00000052214 Opa3 optic atrophy 3 -5.8785 0.0000
50995 ENSMUSG00000022092 Ppp3cc protein phosphatase 3, catalytic subunit, gamma isoform -5.8759 0.0000
50994 ENSMUSG00000051228 Nyx Nyctalopin -5.8751 0.0000
50993 ENSMUSG00000059555 Tor4a Torsin-4A -5.8751 0.0000
50992 ENSMUSG00000087657 Gm16764 predicted gene, 16764 -5.8721 0.0000
50991 ENSMUSG00000024078 Ttc27 tetratricopeptide repeat domain 27 -5.8699 0.0000
50990 ENSMUSG00000058626 Capn11 Calpain-11 -5.8603 0.0000
50989 ENSMUSG00000004642 Slbp stem-loop binding protein -5.8584 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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