SHOGoiN Cell Methylome: GSM1900062-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900062-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M11Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000111749 NA 6.9069 0.0000
2 ENSMUSG00000108895 Gm45070 predicted gene 45070 6.8138 0.0000
3 ENSMUSG00000035818 Plekhs1 pleckstrin homology domain containing, family S member 1 6.7415 0.0000
4 ENSMUSG00000020547 Bzw2 basic leucine zipper and W2 domains 2 6.6724 0.0000
5 ENSMUSG00000036188 Ankmy2 ankyrin repeat and MYND domain containing 2 6.6724 0.0000
6 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 6.5546 0.0000
7 ENSMUSG00000044957 Pp2d1 protein phosphatase 2C-like domain containing 1 6.4919 0.0000
8 ENSMUSG00000111960 NA 6.4260 0.0000
9 ENSMUSG00000084361 Gm8202 predicted gene 8202 6.3576 0.0000
10 ENSMUSG00000102689 Gm37217 predicted gene, 37217 6.3531 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000004540 Psg17 pregnancy specific glycoprotein 17 -6.0446 0.0000
51075 ENSMUSG00000078984 Gm11027 predicted gene 11027 -6.0444 0.0000
51074 ENSMUSG00000007480 Mc5r melanocortin 5 receptor -6.0444 0.0000
51073 ENSMUSG00000087282 Gm15317 predicted gene 15317 -6.0389 0.0000
51072 ENSMUSG00000023147 Wrb tryptophan rich basic protein -6.0389 0.0000
51071 ENSMUSG00000086248 Gm16127 predicted gene 16127 -6.0371 0.0000
51070 ENSMUSG00000015354 Pcolce2 procollagen C-endopeptidase enhancer 2 -6.0371 0.0000
51069 ENSMUSG00000066475 Gm10268 predicted gene 10268 -6.0333 0.0000
51068 ENSMUSG00000105238 Gm44357 predicted gene, 44357 -6.0333 0.0000
51067 ENSMUSG00000105014 Gm44367 predicted gene, 44367 -6.0333 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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