SHOGoiN Cell Methylome: GSM1900062-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900062-1


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M11Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000111749 Gm47927 predicted gene, 47927 6.9069 0.0000
2 ENSMUSG00000108895 Gm45070 predicted gene 45070 6.8138 0.0000
3 ENSMUSG00000035818 Plekhs1 Pleckstrin homology domain-containing family S member 1 6.7415 0.0000
4 ENSMUSG00000020547 Bzw2 Basic leucine zipper and W2 domain-containing protein 2 6.6724 0.0000
5 ENSMUSG00000036188 Ankmy2 Ankyrin repeat and MYND domain-containing protein 2 6.6724 0.0000
6 ENSMUSG00000042306 S100a14 Protein S100-A14 6.5546 0.0000
7 ENSMUSG00000044957 Pp2d1 Protein phosphatase 2C-like domain-containing protein 1 6.4919 0.0000
8 ENSMUSG00000111960 Gm46349 predicted gene, 46349 6.4260 0.0000
9 ENSMUSG00000084361 Gm8202 predicted gene 8202 6.3576 0.0000
10 ENSMUSG00000102689 Gm37217 predicted gene, 37217 6.3531 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000044678 Ly6k Lymphocyte antigen 6K -5.9156 0.0000
50997 ENSMUSG00000110325 Gm45293 predicted gene 45293 -5.9115 0.0000
50996 ENSMUSG00000090778 Gm3235 predicted gene 3235 -5.9115 0.0000
50995 ENSMUSG00000092277 Gm19684 NA -5.9081 0.0000
50994 ENSMUSG00000092243 Gm7030 NA -5.9081 0.0000
50993 ENSMUSG00000110741 Gm48091 predicted gene, 48091 -5.9069 0.0000
50992 ENSMUSG00000109431 Gm45161 predicted gene 45161 -5.9069 0.0000
50991 ENSMUSG00000098703 Gm27527 predicted gene, 27527 -5.9069 0.0000
50990 ENSMUSG00000097073 9430037G07Rik RIKEN cDNA 9430037G07 gene -5.9069 0.0000
50989 ENSMUSG00000088836 Gm23546 predicted gene, 23546 -5.9069 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...